FC930316

Overview
NameFC930316
Unique NameFC930316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930316_ssr45 microsatellite FC930316_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12138 contig Ccv1_Contig12138:398..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_MOUSE (Solute carrier family 2, facilitated glucose transporter member 1 OS=Mus musculus GN=Slc2a1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 53/171 (30.99%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  262 PQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG----------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            P  KK +G ++  VG A LG++ FGY+ GV+N   + + +             I   T+   W +S  +   G  +GSF+ G   ++FGR  +  +  +     A L   ++   S + +I+GR +           VP+Y+ E+SP  +RGALG+++QL I VGIL A V
Sbjct:    3 PSSKKVTGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWNHRIGEPIPSTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVAAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQV 173          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_HUMAN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens GN=SLC2A1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG----------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P  KK +G ++  VG A LG++ FGY+ GV+N   + + +             I   T+   W +S  +   G  +GSF+ G   ++FGR  +  +  +     A L   ++   S + +I+GR +           VP+Y+ E+SP  +RGALG+++QL I VGIL A V
Sbjct:    2 EPSSKKLTGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWVHRYGESILPTTLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTALRGALGTLHQLGIVVGILIAQV 173          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_BOVIN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Bos taurus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 53/172 (30.81%), Postives = 86/172 (50.00%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------------AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P  KK +G ++  VG A LG++ FGY+ GV+N   + +             + +  A  T L    V+    G  +GSF+ G   ++FGR  +  +  +     A L   ++   S + +I+GR +           VP+Y+ E+SP  +RGALG+++QL I VGIL A V
Sbjct:    2 EPTSKKLTGRLMLAVGGAVLGSLQFGYNTGVINAPQKVIEEFYNQTWVQRYGEPIPPATLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMMNLLAFVSAVLMGFSKLGKSFEMLILGRFIIGVYCGLTTGFVPMYVGEVSPTELRGALGTLHQLGIVVGILIAQV 173          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR3_RAT (Solute carrier family 2, facilitated glucose transporter member 3 OS=Rattus norvegicus GN=Slc2a3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 55/160 (34.38%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  301 VGVACLGAILFGYHLGVVNG-----------ALEYLAKDL---GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQL-DAVPLAAGAFL--CATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            V VA +G+  FGY+ GV+N             LE   +DL   G+   T L    V+    G  +GSF+ G   ++FGR  +  L + + +  G  +     A+SV+ +I+GR++           VP+YI E+SP  +RGA G++NQL I VGIL A V
Sbjct:   14 VTVATIGSFQFGYNTGVINAPETIIKDFLNYTLEERLEDLPREGLL--TTLWSLCVAIFSVGGMIGSFSVGLFVNRFGRRNSMLLVNLIAILGGCLMGFAKIAESVEMLILGRLIIGIFCGLCTGFVPMYIGEVSPTALRGAFGTLNQLGIVVGILVAQV 171          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR12_MOUSE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            A +  +L GY LG+++GAL  +   L +  +   Q  +VSSLL GA + S TGG L D++GR     L +  L  G+ +   + S   +I+GRV              +YI+EI+P   RG L S+N+L I  GIL A +
Sbjct:   51 AAISGLLVGYELGLISGALLQIRTLLALTCHE--QEMVVSSLLIGAFLASLTGGVLIDRYGRRLAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVTGILFAYI 188          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 49/139 (35.25%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVL-QGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            A +G +LFGY  GV++GAL  +   LG  E T   + +I S+   GA +G    G+LAD FGR     + ++ +  G+ +  TA  +  MI+GR +           +PLY+SEI+P+ IRG L  +  L I  G + A
Sbjct:   94 AGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIA 232          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR4_RAT (Solute carrier family 2, facilitated glucose transporter member 4 OS=Rattus norvegicus GN=Slc2a4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 56/176 (31.82%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALE-----YLAKDLG---------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P +++ +G ++  V  A LG++ FGY++GV+N   +     Y A  LG         I + T+   W +S  +   G  + SF  G ++   GR R    + V    G  L   A    S + +I+GR L           VP+Y+ EI+P  +RGALG++NQL I +GIL A V
Sbjct:   14 EPPQQRVTGTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNATWLGRQGPGGPDSIPQGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLANNVLAVLGGALMGLANAAASYEILILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGILVAQV 189          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR4_MOUSE (Solute carrier family 2, facilitated glucose transporter member 4 OS=Mus musculus GN=Slc2a4 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 56/176 (31.82%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALE-----YLAKDLG---------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSV---QTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P  ++ +G ++  V  A LG++ FGY++GV+N   +     Y A  LG         I + T+   W +S  +   G  + SF  G ++   GR R    + V    G  L   A +V   + +I+GR L           VP+Y+ EI+P  +RGALG++NQL I +GIL A V
Sbjct:   14 EPPRQRVTGTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNATWLGRQGPGGPDSIPQGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLANNVLAVLGGALMGLANAVASYEILILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGILVAQV 189          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_DROME (Glucose transporter type 1 OS=Drosophila melanogaster GN=Glut1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGA---LEYLAKDL-------GIAENTVLQGW--IVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            A LG + FGY+ GV+N     +E   KD+        I+E  + Q +   VS    G  +G F+GG +A++FGR     L+ V   AGA L      + S + + +GR +           VP+YISEI+P  +RG LG+VNQL + VG+L + V
Sbjct:  265 AVLGMLQFGYNTGVINAPEKNIENFMKDVYKDRYGEDISEEFIQQLYSVAVSIFAIGGMLGGFSGGWMANRFGRKGGLLLNNVLGIAGACLMGFTKVSHSYEMLFLGRFIIGVNCGLNTSLVPMYISEIAPLNLRGGLGTVNQLAVTVGLLLSQV 419          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR4_HUMAN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Homo sapiens GN=SLC2A4 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 52/176 (29.55%), Postives = 85/176 (48.30%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG--------------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQ---SVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P +++ +G ++  V  A LG++ FGY++GV+N   + + +                 I   T+   W +S  +   G  + SF  G ++   GR R   ++ V    G  L   A    S + +I+GR L           VP+Y+ EI+P  +RGALG++NQL I +GIL A V
Sbjct:   14 EPPQQRVTGTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNETWLGRQGPEGPSSIPPGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLVNNVLAVLGGSLMGLANAAASYEMLILGRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGILIAQV 189          
The following BLAST results are available for this feature:
BLAST of FC930316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GTR1_MOUSE2.299e-1430.99Solute carrier family 2, facilitated glucose trans... [more]
GTR1_HUMAN2.299e-1430.81Solute carrier family 2, facilitated glucose trans... [more]
GTR1_BOVIN2.299e-1430.81Solute carrier family 2, facilitated glucose trans... [more]
GTR3_RAT3.003e-1434.38Solute carrier family 2, facilitated glucose trans... [more]
GTR12_MOUSE3.003e-1435.71Solute carrier family 2, facilitated glucose trans... [more]
ITR1_SCHPO3.922e-1435.25Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
GTR4_RAT5.122e-1431.82Solute carrier family 2, facilitated glucose trans... [more]
GTR4_MOUSE5.122e-1431.82Solute carrier family 2, facilitated glucose trans... [more]
GTR1_DROME6.690e-1435.48Glucose transporter type 1 OS=Drosophila melanogas... [more]
GTR4_HUMAN1.490e-1329.55Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006B07EF PostHarvC1 Citrus clementina cDNA clone C34006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930316 ID=FC930316; Name=FC930316; organism=Citrus clementina; type=EST; length=730bp
GACGCAATCAAAGCGAGTGTATGCTTTGACGCCCGCAATCGGAGGCGTGC
GTGCGTGTTGGCTGCTGGCTTTGCTAACACCAGAAGTGTTGCTTTGAATT
GTAATTTTACTAGTAATAATAGTATTTGCATGAGAGATATGGGAATGAAG
CTCACACGTGCCACTCAGGGCGTTGAAACTCTGTTTAGATCAACGGTTAA
GCCCCGATCGGTGAAAGCTCAAGCCTCCGCTGGAGACATTGAAGAAGCTA
CTCCTTTCAAGCCTCAGGAGAAAAAATCTTCTGGAGTAGTTTTGCCTTTT
GTTGGGGTTGCTTGTTTGGGAGCTATTTTATTTGGTTACCACTTAGGGGT
TGTAAATGGCGCTCTTGAATACCTTGCCAAGGACCTTGGGATTGCTGAAA
ACACTGTCCTGCAAGGATGGATTGTCAGCTCATTACTTGCTGGTGCCACT
GTTGGTTCTTTTACTGGAGGATCATTGGCTGACAAATTTGGCAGAACAAG
GACTTTTCAGTTAGACGCAGTTCCCCTCGCAGCTGGAGCATTTCTATGTG
CTACTGCCCAGAGTGTACAGACTATGATAATTGGCCGCGTACTGGCAGGC
ATTGGAATTGGCATCTCATCTGCCATTGTACCACTTTATATATCTGAGAT
CTCACCAAACTGAATTCGTGGTGCTCTTGGATCAGTAAACCAACTTTTTA
TATGTGTTGGGATTCTTGCAGCATTGGTAG
back to top