FC930316

Overview
NameFC930316
Unique NameFC930316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930316_ssr45 microsatellite FC930316_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12138 contig Ccv1_Contig12138:398..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR12_XENLA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Xenopus laevis GN=slc2a12 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 1
Query:  307 VACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +A +  +L GY LG+++GAL  L   L +      Q  +VS+LL GA V S  GG L D +GR  T    ++ L     L     S  ++I GR+              +YI+E+SP   RG L S+N+L I  GIL A +
Sbjct:   40 IAAISGLLVGYELGIISGALLQLQSLLELTCQQ--QEIVVSALLIGALVASLVGGCLIDLYGRRTTIIFTSILLVFANLLPVVVVSYGSLIAGRIFIGVSISLSAIATCVYIAELSPQDKRGMLVSLNELMIVAGILLAYI 178          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  265 QEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            + +K S  +     VA +  +LFGY  GV++GAL  L  DLG   ++  +  I S+    A + + T G LAD  GR R           G+ + A +++V  M++GR +           VP+YI+E++P  +RG L  +  +FI  G L A
Sbjct:   73 EAEKISSWIWVLSAVAGISGLLFGYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIA 225          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_LEIDO (Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            A LG  LFGY  GV+N AL  +    G +E++     IV+  +AGA VG+F  G ++  FGR     +       G+ L   A +V+ +++ RV+           +P+Y++E++    RGA   +N LF+  G   A
Sbjct:    9 AALGGFLFGYDTGVINAALFQMKDHFGFSEHSWQYALIVAIAIAGAFVGAFISGFISAAFGRRPCIAVADALFVIGSVLMGAAPNVEVVLVSRVIVGLAIGISSATIPVYLAEVTSPKHRGATIVLNNLFLTGGQFVA 146          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 55/173 (31.79%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNG--ALEYLAKDLGIA----------------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            K  + K +  V   V +A +G ++FGY +G+  G  A++   K+   +                +N  LQ    SSL   A V SF   +   K GR  T QL ++    G  L A A ++  +IIGR+L           VPL++SEI+P  +RG L  V QL + +GIL A
Sbjct:   12 KSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHENNYCKYDNQFLQ-LFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIA 183          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR8_HUMAN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLGIAE--NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            A LG + FG+ LG  + A+  L +    A   +     W  + +  GA  G   GG L D+ GR  +  L +VP  AG  +   AQ V  ++ GR+L            P+YISEI+   +RG LGS  QL + VGIL A
Sbjct:   33 AALGPLSFGFALGYSSPAIPSLQRAAPPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLA 172          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 49/163 (30.06%), Postives = 77/163 (47.24%), Query Frame = 1
Query:  241 EEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            E   P KP ++ +       +  A + +IL GY +GV++GA+ Y+ +DL I  N +  G +  SL   + +GS   G  +D  GR  T  L      AGA L   + +   ++ GR +            P+Y +E+SP   RG L S  ++FI  GI+   V
Sbjct:   22 ESVLPAKPPKRNNYAFACAIL--ASMTSILLGYDIGVMSGAMIYIKRDLKI--NDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYV 180          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: YD387_YEAST (Probable metabolite transport protein YDR387C OS=Saccharomyces cerevisiae GN=YDR387C PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 60/170 (35.29%), Postives = 89/170 (52.35%), Query Frame = 1
Query:  226 SAGDIEEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLA-KDLGIAENTVLQGWIV-SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +A DIE+  P+    K S    L FVG A +G +LFGY  GV++G L  L  +DL +   T +Q  ++ SS   G+  GS     LAD++GR  T  +        A   A A+++  +I GR+L           VPL++SEISP+ IRG + ++N + I  G L + V
Sbjct:   24 TANDIEQL-PYALTFKTS----LIFVG-ATIGGLLFGYDTGVISGVLLSLKPEDLSLVVLTDVQKELITSSTSVGSFFGSILAFPLADRYGRRITLAICCSIFILAAIGMAIARTLTFLICGRLLVGIAVGVSAQCVPLFLSEISPSRIRGFMLTLNIIAITGGQLVSYV 187          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 51/157 (32.48%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  262 PQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDL--GIAE---NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGIL 717
            P+       +LPF+  A LG +L+GY +G  + A   L      GI+    ++V  G + S  L GA  GS    ++AD  GR +   L A+    GA + A A +   +IIGRV+            P+YI+E +P+ IRG L S+ + FI +G++
Sbjct:   39 PENYSVVAAILPFLFPA-LGGLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMV 194          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR1_CHICK (Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 1
Query:  301 VGVACLGAILFGYHLGVVNGALEYLA------------KDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA---TAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            VG A LG++ FGY+ GV+N   + +             + +  A  T L    V+    G  +GSF+ G   ++FGR  +  +  +     A L      A S + +I+GR +           VP+Y+ E+SP  +RGALG+ +QL I +GIL A V
Sbjct:   15 VGGAVLGSLQFGYNTGVINRPQKVIEDFYNHTWLYRYEEPISPATLTTLWSLSVAIFSVGGMIGSFSVGLFVNRFGRRNSMLMSNILAFLAAVLMGFSKMALSFEMLILGRFIIGLYSGLTTGFVPMYVGEVSPTALRGALGTFHQLGIVLGILIAQV 172          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR10_MOUSE (Solute carrier family 2, facilitated glucose transporter member 10 OS=Mus musculus GN=Slc2a10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 49/144 (34.03%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  286 VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGIL 717
            V+L    V+ LG + FGY L V++GAL  L  + G++   + Q  +V SLL GA + S  GG L D +GR R        L AG+ +   A S+  +++GR+              +Y+SE+     RG L S+ ++ I VGIL
Sbjct:    7 VLLLCASVSLLGGLTFGYELAVISGALLPLQLNFGLS--CLEQELLVGSLLLGALLASLVGGFLIDCYGRRRAILGSNAVLLAGSLILGLASSLPWLLLGRLSVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEVGITVGIL 148          
The following BLAST results are available for this feature:
BLAST of FC930316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GTR12_XENLA1.490e-1334.75Solute carrier family 2, facilitated glucose trans... [more]
ITR2_SCHPO1.947e-1331.37Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]
GTR1_LEIDO4.336e-1331.16Membrane transporter D1 OS=Leishmania donovani PE=... [more]
STP8_ARATH9.660e-1331.79Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]
GTR8_HUMAN1.262e-1235.00Solute carrier family 2, facilitated glucose trans... [more]
PLT5_ARATH1.648e-1230.06Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
YD387_YEAST2.152e-1235.29Probable metabolite transport protein YDR387C OS=S... [more]
XYLL2_ARATH2.152e-1232.48D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]
GTR1_CHICK2.811e-1231.01Solute carrier family 2, facilitated glucose trans... [more]
GTR10_MOUSE2.811e-1234.03Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC34006B07EF PostHarvC1 Citrus clementina cDNA clone C34006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930316 ID=FC930316; Name=FC930316; organism=Citrus clementina; type=EST; length=730bp
GACGCAATCAAAGCGAGTGTATGCTTTGACGCCCGCAATCGGAGGCGTGC
GTGCGTGTTGGCTGCTGGCTTTGCTAACACCAGAAGTGTTGCTTTGAATT
GTAATTTTACTAGTAATAATAGTATTTGCATGAGAGATATGGGAATGAAG
CTCACACGTGCCACTCAGGGCGTTGAAACTCTGTTTAGATCAACGGTTAA
GCCCCGATCGGTGAAAGCTCAAGCCTCCGCTGGAGACATTGAAGAAGCTA
CTCCTTTCAAGCCTCAGGAGAAAAAATCTTCTGGAGTAGTTTTGCCTTTT
GTTGGGGTTGCTTGTTTGGGAGCTATTTTATTTGGTTACCACTTAGGGGT
TGTAAATGGCGCTCTTGAATACCTTGCCAAGGACCTTGGGATTGCTGAAA
ACACTGTCCTGCAAGGATGGATTGTCAGCTCATTACTTGCTGGTGCCACT
GTTGGTTCTTTTACTGGAGGATCATTGGCTGACAAATTTGGCAGAACAAG
GACTTTTCAGTTAGACGCAGTTCCCCTCGCAGCTGGAGCATTTCTATGTG
CTACTGCCCAGAGTGTACAGACTATGATAATTGGCCGCGTACTGGCAGGC
ATTGGAATTGGCATCTCATCTGCCATTGTACCACTTTATATATCTGAGAT
CTCACCAAACTGAATTCGTGGTGCTCTTGGATCAGTAAACCAACTTTTTA
TATGTGTTGGGATTCTTGCAGCATTGGTAG
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