FC930316

Overview
NameFC930316
Unique NameFC930316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930316_ssr45 microsatellite FC930316_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12138 contig Ccv1_Contig12138:398..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR10_HUMAN (Solute carrier family 2, facilitated glucose transporter member 10 OS=Homo sapiens GN=SLC2A10 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 1
Query:  289 VLPF-VGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGIL 717
            VLP    V+ LG + FGY L V++GAL  L  D G++   + Q ++V SLL GA + S  GG L D +GR +      + L AG+     A S+  +++GR +             +Y+SE+     RG L S+ +  I VGIL
Sbjct:    7 VLPLCASVSLLGGLTFGYELAVISGALLPLQLDFGLS--CLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGIL 148          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR4_BOVIN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 51/176 (28.98%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  259 KPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLG--------------IAENTVLQGWIVSSLL--AGATVGSFTGGSLADKFGRTRTFQLD-AVPLAAGAF--LCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +P  ++ +G ++  V  A LG++ FGY++GV+N   + + +                 I   T+   W +S  +   G  + SF  G ++   GR R    + A+ +  G    L   A S + +I+GR             VP+Y+ EI+P  +RGALG++NQL I  GIL A V
Sbjct:   14 EPPRQRVTGTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNETWLGRQGPEGPGSIPPGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLFNNALAVLGGTLMGLAKAAASYEMLILGRFFIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVTGILIAQV 189          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR12_DANRE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Danio rerio GN=slc2a12 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  262 PQEKKSSG--VVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGIL 717
            P  K  +G  +VL  V VACL  +L GY + +++GAL  L   L ++     Q  +V SLL GA + S  GG++ D +GR  T  L A+    G  L     S   +++GR+L             LY +E++P   RG    V +L + +G+L
Sbjct:   33 PSAKSGNGRALVLCSVSVACLSGLLMGYEMSLISGALLQLRDVLTLS--CPEQEQVVGSLLLGAFLLSLGGGTILDHYGRRFTIILTALLCVLGTLLSVCVVSFWALVVGRMLVGMSVALSGTASCLYAAEVAPAAWRGRCVCVYELMVVLGML 184          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: YNCC_BACSU (Putative metabolite transport protein yncC OS=Bacillus subtilis GN=yncC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 45/140 (32.14%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            A  G +LFGY  GV+NGAL ++A+   +    V +G + S LL GA  G+   G LAD++GR +     +      +   A A +V  M + R L           VP +++E++P+  RG + + N+L I  G   A V
Sbjct:   18 ATFGGLLFGYDTGVINGALPFMARPDQLDLTPVTEGLVTSILLLGAAFGALLCGRLADRYGRRKMILNLSFLFFLASLGTALAPNVFIMAVFRFLLGLAVGGASAMVPAFLAEMAPHEKRGRMVTQNELMIVGGQFLAYV 157          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STP6_ARATH (Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 54/170 (31.76%), Postives = 78/170 (45.88%), Query Frame = 1
Query:  268 EKKSSGVVLPFVGVACLGAILFGYHLGVVNG--ALEYLAKDLGIA----------------ENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            E K +  V   V +A +G ++FGY +G+  G  A++   K+   A                +N  LQ    SSL   A V SF   +   K GR  T Q  ++    G  L A A ++  +IIGR+            VPL++SEI+P  +RG L  V QL + +GIL A
Sbjct:   14 EAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYCKYDNQFLQ-LFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIA 182          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 50/159 (31.45%), Postives = 70/159 (44.03%), Query Frame = 1
Query:  307 VACLGAILFGYHLGVVNGALE------------YLAKDLGIAENTVLQ------GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            VA +G ++FGY +G+  G               Y  K    + N   Q          SSL   A + S    ++  KFGR  +     V   AGA +   A++V  +I+GR+L           VPLY+SE++P   RGAL    QL I +GIL A V
Sbjct:   31 VAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANV 189          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 55/181 (30.39%), Postives = 82/181 (45.30%), Query Frame = 1
Query:  220 QASAGDIEEATPFKPQEKKSSGVVL--------PFV----GVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLA-GATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            +A A D E+    KP   +    V+        PF+     VA +   +FGY  G ++ AL  +  DL     T  +  IV++  + GA + S   G+ AD FGR R      +    GA L  +A +   M +GR++            PL+ISEI+P  IRG L  +N L++  G L A
Sbjct:   51 RAPASDDEDRIQIKPVNDEDDTSVMITFNQSLSPFIITLTFVASISGFMFGYDTGYISSALISIGTDLDHKVLTYGEKEIVTAATSLGALITSIFAGTAADIFGRKRCLMGSNLMFVIGAILQVSAHTFWQMAVGRLIMGFGVGIGSLIAPLFISEIAPKMIRGRLTVINSLWLTGGQLVA 231          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR8_MOUSE (Solute carrier family 2, facilitated glucose transporter member 8 OS=Mus musculus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 55/175 (31.43%), Postives = 80/175 (45.71%), Query Frame = 1
Query:  226 SAGDIEEATPF-KPQEKKSSGVVLPFVG--VACLGAILFGYHLGVVNGALEYLAKD----LGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            S  D +E  P  +P E ++      F+    A LG + FG+ LG  + A+  L +     L + +N     W  + +  GA  G   GG L D+ GR  +  L  VP   G  +   A+ V  ++ GR+L            P+YISEI+   +RG LGS  QL +  GIL A V
Sbjct:    2 SPEDPQETQPLLRPPEARTPRGRRVFLASFAAALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDNAA--SWFGAVVTLGAAAGGILGGWLLDRSGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVTGILLAYV 174          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 43/138 (31.16%), Postives = 72/138 (52.17%), Query Frame = 1
Query:  280 SGVVLPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQ 693
            SG VL  +  A +G +L G+    + GA+ Y+ K+  +  N  ++G IV+  L GAT+ +   G +AD  GR     L ++    G+ +   + +V  +++GR+L           VP+YISE +P  IRG L ++ Q
Sbjct:    2 SGAVLVAIAAA-VGNLLQGWDNATIAGAVLYIKKEFNLESNPSVEGLIVAMSLIGATLITTCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIYISETAPPEIRGLLNTLPQ 138          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 53/176 (30.11%), Postives = 76/176 (43.18%), Query Frame = 1
Query:  268 EKKSSGVVLPFV----GVACLGAILFGYHLGVVNGALE------------YLAKDLGIAENTVLQ------GWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +K   G + PFV     VA +G ++FGY +G+  G               Y  +    + N   Q          SSL   A + S    ++  KFGR  +     +   AGA +   A+ V  +I+GR+L           VPLY+SE++P   RGAL    QL I +GIL A V
Sbjct:   12 QKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEV 187          
The following BLAST results are available for this feature:
BLAST of FC930316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GTR10_HUMAN2.811e-1234.72Solute carrier family 2, facilitated glucose trans... [more]
GTR4_BOVIN3.671e-1228.98Solute carrier family 2, facilitated glucose trans... [more]
GTR12_DANRE3.671e-1232.47Solute carrier family 2, facilitated glucose trans... [more]
YNCC_BACSU4.794e-1232.14Putative metabolite transport protein yncC OS=Baci... [more]
STP6_ARATH4.794e-1231.76Sugar transport protein 6 OS=Arabidopsis thaliana ... [more]
STC_RICCO6.262e-1231.45Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
ITR1_YEAST6.262e-1230.39Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
GTR8_MOUSE6.262e-1231.43Solute carrier family 2, facilitated glucose trans... [more]
MSSP2_ARATH1.068e-1131.16Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]
STP1_ARATH1.395e-1130.11Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34006B07EF PostHarvC1 Citrus clementina cDNA clone C34006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930316 ID=FC930316; Name=FC930316; organism=Citrus clementina; type=EST; length=730bp
GACGCAATCAAAGCGAGTGTATGCTTTGACGCCCGCAATCGGAGGCGTGC
GTGCGTGTTGGCTGCTGGCTTTGCTAACACCAGAAGTGTTGCTTTGAATT
GTAATTTTACTAGTAATAATAGTATTTGCATGAGAGATATGGGAATGAAG
CTCACACGTGCCACTCAGGGCGTTGAAACTCTGTTTAGATCAACGGTTAA
GCCCCGATCGGTGAAAGCTCAAGCCTCCGCTGGAGACATTGAAGAAGCTA
CTCCTTTCAAGCCTCAGGAGAAAAAATCTTCTGGAGTAGTTTTGCCTTTT
GTTGGGGTTGCTTGTTTGGGAGCTATTTTATTTGGTTACCACTTAGGGGT
TGTAAATGGCGCTCTTGAATACCTTGCCAAGGACCTTGGGATTGCTGAAA
ACACTGTCCTGCAAGGATGGATTGTCAGCTCATTACTTGCTGGTGCCACT
GTTGGTTCTTTTACTGGAGGATCATTGGCTGACAAATTTGGCAGAACAAG
GACTTTTCAGTTAGACGCAGTTCCCCTCGCAGCTGGAGCATTTCTATGTG
CTACTGCCCAGAGTGTACAGACTATGATAATTGGCCGCGTACTGGCAGGC
ATTGGAATTGGCATCTCATCTGCCATTGTACCACTTTATATATCTGAGAT
CTCACCAAACTGAATTCGTGGTGCTCTTGGATCAGTAAACCAACTTTTTA
TATGTGTTGGGATTCTTGCAGCATTGGTAG
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