FC930316

Overview
NameFC930316
Unique NameFC930316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930316_ssr45 microsatellite FC930316_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12138 contig Ccv1_Contig12138:398..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR8_BOVIN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Bos taurus GN=SLC2A8 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDLGIAENTV--LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            A LG + FG+ LG  + A+  L +    A +       W  + +  GA  G   GG L D+ GR  +  L A+P  AG  +   AQ++  ++ GR+L            P+YISEI+   +RG LGS  QL +  GIL A
Sbjct:   33 AALGPLSFGFALGYSSPAIPSLRRAAPPAPHLDEDAASWFGAIVTLGAAAGGVLGGWLLDRAGRKLSLVLCALPFVAGFAVITAAQNLWMLLGGRLLTGLACGIASLVAPVYISEIAYPEVRGLLGSCVQLMVVTGILLA 172          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: HGT1_KLULA (High-affinity glucose transporter OS=Kluyveromyces lactis GN=HGT1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  307 VACLGAILFGYHLGVVNGALEY-LAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGIL 717
            +AC+  ++FG+ +  ++  +   + KD     +++  G I +S+  G+ +GS    + +D FGR  +  + A     GA L   AQ    +I+GRV+            P+Y SEISP  IRG +  + Q  + VGI+
Sbjct:   34 IACISGLMFGFDIASMSSMIGTDVYKDYFSNPDSLTYGGITASMAGGSFLGSLISPNFSDAFGRKVSLHICAALWIIGAILQCAAQDQAMLIVGRVISGMGIGFGSSAAPVYCSEISPPKIRGTISGLFQFSVTVGIM 171          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 46/142 (32.39%), Postives = 65/142 (45.77%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAKDL--GIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            A LG + FG+ LG  + A+  L +     +        W  + +  GA  G   GG L D+ GR  +  L  VP   G  +   A+ V  ++ GR+L            P+YISEI+   +RG LGS  QL +  GIL A V
Sbjct:   33 AALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDTAASWFGAVVTLGAAAGGVLGGWLLDRAGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVTGILLAYV 174          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STP2_ARATH (Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 56/180 (31.11%), Postives = 80/180 (44.44%), Query Frame = 1
Query:  235 DIEEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGA-------LEYLA----KDLGIAENTV------LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            ++EE T   P   K +G V     +A +G ++FGY +G+  G        L++      K   + EN        L     SSL       SF    ++  FGR  T  L ++    GA L  +AQ +  +I GR+L           VPL+ISEI+P   RG L  + Q  I +GILAA
Sbjct:    7 NVEEGTKAFPA--KLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHRVHENNYCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAILNLSAQELGMLIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILAA 184          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: HUP2_CHLKE (H(+)/hexose cotransporter 2 OS=Chlorella kessleri GN=HUP2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 55/155 (35.48%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  319 GAILFGYHLGVVNGAL---EYLAKDL-GIAENTV----------------LQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            G +LFGY +GV  G     E+L K    I + T                 LQ +  S  LAG  V SF  GS+  ++GR  T  + +V   AGA L A AQ +  ++IGRVL           VPLY+SE +P   RG L  + QL + +GI+ A
Sbjct:   39 GGLLFGYDIGVTGGVTSMPEFLQKFFPSIYDRTQQPSDSKDPYCTYDDQKLQLFTSSFFLAGMFV-SFFAGSVVRRWGRKPTMLIASVLFLAGAGLNAGAQDLAMLVIGRVLLGFGVGGGNNAVPLYLSECAPPKYRGGLNMMFQLAVTIGIIVA 192          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 53/171 (30.99%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  283 GVVLPFVGVACL----GAILFGYHLGVVNGAL---EYLAK-----------------DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            G V  FV + C+    G +LFGY +G+  G +   ++L K                 +    +N +L     SSL   A   SF   ++   FGR  +  + ++   +GA L   A +++ +IIGR+            VPLY+SE++P  IRGAL    QL I +GILAA
Sbjct:   18 GRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLT-LFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAA 187          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 53/158 (33.54%), Postives = 71/158 (44.94%), Query Frame = 1
Query:  307 VACLGAILFGYHLGVVNGAL---EYLAKDLGIAE----------------NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            VA +G +LFGY LG+  G     E+L K     E                N +LQ    SSL   A V SF    +  K GR  +  +  +    GA   A A +V  +IIGR+L            P+Y+SE++P  IRGAL    Q+ I +GIL A
Sbjct:   31 VAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQ-LFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVA 187          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR6_HUMAN (Solute carrier family 2, facilitated glucose transporter member 6 OS=Homo sapiens GN=SLC2A6 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 46/141 (32.62%), Postives = 65/141 (46.10%), Query Frame = 1
Query:  310 ACLGAILFGYHLGVVNGALEYLAK----DLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILA 720
            A LG   FGY L   +  +  L +    DL + ++     W  S    GA  G  +   L D  GR  +    AVP AAG  L A A  +  +++GR L           +P+Y+SEI+P  +RGALG+  QL    G L+
Sbjct:   45 AVLGNFSFGYALVYTSPVIPALERSLDPDLHLTKSQA--SWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFSAVPSAAGYALMAGAHGLWMLLLGRTLTGFAGGLTAACIPVYVSEIAPPGVRGALGATPQLMAVFGSLS 183          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 52/158 (32.91%), Postives = 75/158 (47.47%), Query Frame = 1
Query:  307 VACLGAILFGYHLGVVNGAL---EYLAK-----DLGIAE-----------NTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCATAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAA 723
            VA +G +LFGY LG+  G     E+L+K     D  + E           N +LQ    SSL   A   SF   ++  K+GR  +  +  V    G+   A A +V  +I+GR+L            P+Y+SE++P  IRGAL    Q+ I +GIL A
Sbjct:   31 VAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQ-LFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIA 187          
BLAST of FC930316 vs. ExPASy Swiss-Prot
Match: GTR5_HORSE (Solute carrier family 2, facilitated glucose transporter member 5 OS=Equus caballus GN=SLC2A5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 52/179 (29.05%), Postives = 82/179 (45.81%), Query Frame = 1
Query:  238 IEEATPFKPQEKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------------AKDLGIAENTVLQGWIVSSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCAT---AQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPN*IRGALGSVNQLFICVGILAALV 729
            +E+  P K + + +  + L  +  A   +  +GY++  VN   E +            ++ +     T+L    VS    G  VGS   G L ++ GR  T   + +     A L  T   A+S + +I+ R+L           VP+Y+ E+SP  +RGALG V QLFI VGIL A +
Sbjct:    1 MEQQDPIKKEGRLTPVLALATLIAAFGSSFQYGYNVAAVNSPAELMKAFYNETHYSRFSEYISEFSLTLLWSISVSMFPFGGFVGSLMVGPLVNRLGRKGTLLFNNIFSIVPAILMGTSKTARSYEMIILSRLLVGICAGLSSNVVPMYLGELSPKNLRGALGVVPQLFITVGILVAQI 179          
The following BLAST results are available for this feature:
BLAST of FC930316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GTR8_BOVIN1.822e-1133.57Solute carrier family 2, facilitated glucose trans... [more]
HGT1_KLULA2.379e-1128.99High-affinity glucose transporter OS=Kluyveromyces... [more]
GTR8_RAT2.379e-1132.39Solute carrier family 2, facilitated glucose trans... [more]
STP2_ARATH3.108e-1131.11Sugar transport protein 2 OS=Arabidopsis thaliana ... [more]
HUP2_CHLKE4.059e-1135.48H(+)/hexose cotransporter 2 OS=Chlorella kessleri ... [more]
STP11_ARATH5.301e-1130.99Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP10_ARATH5.301e-1133.54Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
GTR6_HUMAN5.301e-1132.62Solute carrier family 2, facilitated glucose trans... [more]
STP9_ARATH6.923e-1132.91Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
GTR5_HORSE6.923e-1129.05Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionC34006B07EF PostHarvC1 Citrus clementina cDNA clone C34006B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930316 ID=FC930316; Name=FC930316; organism=Citrus clementina; type=EST; length=730bp
GACGCAATCAAAGCGAGTGTATGCTTTGACGCCCGCAATCGGAGGCGTGC
GTGCGTGTTGGCTGCTGGCTTTGCTAACACCAGAAGTGTTGCTTTGAATT
GTAATTTTACTAGTAATAATAGTATTTGCATGAGAGATATGGGAATGAAG
CTCACACGTGCCACTCAGGGCGTTGAAACTCTGTTTAGATCAACGGTTAA
GCCCCGATCGGTGAAAGCTCAAGCCTCCGCTGGAGACATTGAAGAAGCTA
CTCCTTTCAAGCCTCAGGAGAAAAAATCTTCTGGAGTAGTTTTGCCTTTT
GTTGGGGTTGCTTGTTTGGGAGCTATTTTATTTGGTTACCACTTAGGGGT
TGTAAATGGCGCTCTTGAATACCTTGCCAAGGACCTTGGGATTGCTGAAA
ACACTGTCCTGCAAGGATGGATTGTCAGCTCATTACTTGCTGGTGCCACT
GTTGGTTCTTTTACTGGAGGATCATTGGCTGACAAATTTGGCAGAACAAG
GACTTTTCAGTTAGACGCAGTTCCCCTCGCAGCTGGAGCATTTCTATGTG
CTACTGCCCAGAGTGTACAGACTATGATAATTGGCCGCGTACTGGCAGGC
ATTGGAATTGGCATCTCATCTGCCATTGTACCACTTTATATATCTGAGAT
CTCACCAAACTGAATTCGTGGTGCTCTTGGATCAGTAAACCAACTTTTTA
TATGTGTTGGGATTCTTGCAGCATTGGTAG
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