FC930322

Overview
NameFC930322
Unique NameFC930322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_CHICK (Elongation factor Tu, mitochondrial (Fragment) OS=Gallus gallus GN=TUFM PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 665
            +++ H+N+  IGHVD GK+T T  +   L        +R+E                +DK   ER RGITI+ A  ++ T + +    D PGH D++KNMITGT+  D  +L++ +T G          QTREH LLA  +GV+ ++   NK DA     S A    +V+ E+   L ++GY+ E+ P V
Sbjct:   43 RDRPHVNVGTIGHVDHGKTTLTAAITKVLSESGGARFQRYED---------------IDKAPEERARGITINAAHVEYSTARRHYAHTDCPGHADYVKNMITGTAPLDGCILVVAATDGQMP-------QTREHLLLARQVGVRHVVVYVNKADAV----SDAELLPLVELELRELLAEMGYDAERTPVV 206          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_BORRA (Elongation factor Tu OS=Borrelia recurrentis (strain A1) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 65/197 (32.99%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   90 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF 680
            I  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F
Sbjct:    5 IFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAF 175          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_BORDL (Elongation factor Tu OS=Borrelia duttonii (strain Ly) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 65/197 (32.99%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   90 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF 680
            I  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F
Sbjct:    5 IFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAF 175          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_ANAMM (Elongation factor Tu OS=Anaplasma marginale (strain St. Maries) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 75/210 (35.71%), Postives = 101/210 (48.10%), Query Frame = 3
Query:  105 KTHINIVVIGHVDSGKSTTTGHLIY----KLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW 722
            K HIN+  IGHVD GK+T T  L      +L G +K V                KY  + DK   ER RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  EV   L   GY+ + V  V  S  +    +E S++  W
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLTRRLSGANKVV----------------KYDEI-DKAPEERARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSATDGAMP-------QTREHILLAKQVGVKDIVTWINKCDVVE---DEEMLSIVEMEVRELLSNYGYDGDGVDVVRGSAVKA---LEESSDGPW 185          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU2_MYXXD (Elongation factor Tu 2 OS=Myxococcus xanthus (strain DK 1622) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGD 689
            + K H+NI  IGHVD GK++ T  +                K  A+    +F    ++DK   ERERGITI  +  +++T+  +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P   +   EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDLIDKAPEERERGITISTSHVEYQTSNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDDIPIIPGSALKALEGD 182          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU1_THETH (Elongation factor Tu-A OS=Thermus thermophilus GN=tufA PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 67/189 (35.45%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 665
            + K H+N+  IGHVD GK+T T  L Y                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVI 172          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU1_THET8 (Elongation factor Tu-A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufA PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 67/189 (35.45%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 665
            + K H+N+  IGHVD GK+T T  L Y                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVI 172          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU1_MYXXD (Elongation factor Tu 1 OS=Myxococcus xanthus (strain DK 1622) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.165e-21
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGD 689
            + K H+NI  IGHVD GK++ T  +                K  A+    +F    ++DK   ERERGITI  +  +++T+  +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P   +   EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDLIDKAPEERERGITISTSHVEYQTSNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDDIPIIPGSALKALEGD 182          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_THEM4 (Elongation factor Tu OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 66/189 (34.92%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 665
            + K H+N+  IGH+D GK+T T  +   L    +     +E+               +DK   E+ERGITI+IA  ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D       +   D +  EV   L K  +  + +P +
Sbjct:    8 RSKPHLNVGTIGHIDHGKTTLTAAITKYLSLFGRADYTPYEQ---------------IDKAPEEKERGITINIAHIEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTDMVD---DEELVDLVEMEVRELLNKYEFPGDDLPVI 171          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 66/200 (33.00%), Postives = 98/200 (49.00%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGD 689
            + K H+NI  IGHVD GK++ T  +                K  A+    +F     +DK   ERERGITI  A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P   +   EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDQIDKAPEERERGITISTAHVEYQTKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDSIPIIPGSALKALEGD 182          
The following BLAST results are available for this feature:
BLAST of FC930322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHICK1.165e-2134.21Elongation factor Tu, mitochondrial (Fragment) OS=... [more]
EFTU_BORRA1.165e-2132.99Elongation factor Tu OS=Borrelia recurrentis (stra... [more]
EFTU_BORDL1.165e-2132.99Elongation factor Tu OS=Borrelia duttonii (strain ... [more]
EFTU_ANAMM1.165e-2135.71Elongation factor Tu OS=Anaplasma marginale (strai... [more]
EFTU2_MYXXD1.165e-2132.50Elongation factor Tu 2 OS=Myxococcus xanthus (stra... [more]
EFTU1_THETH1.165e-2135.45Elongation factor Tu-A OS=Thermus thermophilus GN=... [more]
EFTU1_THET81.165e-2135.45Elongation factor Tu-A OS=Thermus thermophilus (st... [more]
EFTU1_MYXXD1.165e-2132.50Elongation factor Tu 1 OS=Myxococcus xanthus (stra... [more]
EFTU_THEM41.522e-2134.92Elongation factor Tu OS=Thermosipho melanesiensis ... [more]
EFTU_STIAU1.522e-2133.00Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34006C01EF PostHarvC1 Citrus clementina cDNA clone C34006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930322 ID=FC930322; Name=FC930322; organism=Citrus clementina; type=EST; length=741bp
GATTTTCGCTACACGCTCTCAGTTTCTGCAAGTCGGCGAGAGAGAAACCT
TTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTAA
GGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAA
AGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAG
CGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTC
ATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTG
GTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTAC
TGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGAT
TACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCA
CCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCAT
GCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAA
CAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAA
TTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAG
AAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGA
GAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
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