FC930322

Overview
NameFC930322
Unique NameFC930322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_SYNFM (Elongation factor Tu OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 665
            + K H+N+  +GH+D GK+T T         I K++ +R   E    ++        +DK   ERERGITI  A  ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D            E+V+ E+   L K G+  + VP +
Sbjct:    8 RTKPHVNVGTVGHIDHGKTTLTA-------AITKQLAKRGRAEFVPFDQ--------IDKAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAADDGPMP-------QTREHILLSRQVGVPYIVVFLNKVDMV----DDPELIELVELELRELLSKYGFPGDDVPII 171          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 68/217 (31.34%), Postives = 107/217 (49.31%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFE--------GDNMIERSTNLDWY 725
            + K H+NI  IGH+D GK+T T         I K + +++       +   F     +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  +  + +P V ++ F         G++++E    +D Y
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDKYP------DLNPFTPFDEIDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPALVVALNKCDMVD---DEELIELVEMEVRELLSEYEFPGDDIPVVRVAAFPALNGDAKWGESVLELMNAVDEY 201          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCUA (Elongation factor Tu OS=Mycobacterium ulcerans (strain Agy99) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 563
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTU (Elongation factor Tu OS=Mycobacterium tuberculosis GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 563
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTA (Elongation factor Tu OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 563
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 563
            + K H+NI  IGHVD GK+T T         I K + +++     E+N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYP----ELNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDA 142          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 563
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 563
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 563
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+   K    +D    ER+RGITI+IA  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNET--KAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADA 142          
BLAST of FC930322 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBP (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 64/201 (31.84%), Postives = 97/201 (48.26%), Query Frame = 3
Query:   99 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDN 692
            + K H+NI  IGHVD GK+T T  +   L            K     NK +  Y  + D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D           + + +E+   L K  +  +K PF+    +   EG++
Sbjct:    8 RSKPHLNIGTIGHVDHGKTTLTAAITTTLA-----------KLVGGKNK-AIAYDQI-DNAPEEKARGITIATSHQEYETPNRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVYLNKADMLAADERDDMVEMVKEEIKDLLNKYNFPGDKTPFISGSALKALEGED 188          
The following BLAST results are available for this feature:
BLAST of FC930322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SYNFM4.427e-2134.21Elongation factor Tu OS=Syntrophobacter fumaroxida... [more]
EFTU_NOCSJ4.427e-2131.34Elongation factor Tu OS=Nocardioides sp. (strain B... [more]
EFTU_MYCUA4.427e-2140.38Elongation factor Tu OS=Mycobacterium ulcerans (st... [more]
EFTU_MYCTU4.427e-2140.65Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCTA4.427e-2140.65Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCMM4.427e-2140.38Elongation factor Tu OS=Mycobacterium marinum (str... [more]
EFTU_MYCBT4.427e-2140.65Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBP4.427e-2140.65Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBO4.427e-2140.65Elongation factor Tu OS=Mycobacterium bovis GN=tuf... [more]
EFTU_LEPBP4.427e-2131.84Elongation factor Tu OS=Leptospira biflexa serovar... [more]

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Properties
Property NameValue
Genbank descriptionC34006C01EF PostHarvC1 Citrus clementina cDNA clone C34006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930322 ID=FC930322; Name=FC930322; organism=Citrus clementina; type=EST; length=741bp
GATTTTCGCTACACGCTCTCAGTTTCTGCAAGTCGGCGAGAGAGAAACCT
TTTAGCAAATTTCATATCAAGGTTTTATACTAGATTTGCATAATGGGTAA
GGAGAAGACTCACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAA
AGTCGACCACCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAG
CGTGTGATCGAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTC
ATTCAAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTG
GTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTAC
TGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGAT
TACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCA
CCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCAT
GCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAA
CAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAA
TTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAG
AAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGA
GAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
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