FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP    E M++HH +HH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L+P  E  G     ++   I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHFDKETMEIHHDRHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPANIQTAVRNNGGGHLNHSLFWELLSPNSEEKG-----TVVEKIKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
[Close]
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.591e-29
Identity = 72/176 (40.91%), Postives = 97/176 (55.11%), Query Frame = 2 
Query:  170 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPH----SSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +   TLP+LPYDYSAL P IS EI++LHH KHH AYV   N  +EQL +A +K    ++  L+  + F+  GH+ HSI+W N+    +GGGEP        L  AI   FGS      +++   A  QGSGW  L  +    RL+VE   +    V +  T  P+L  D WEHA+Y
Sbjct:    1 MSVYTLPELPYDYSALAPVISPEIIELHHDKHHAAYVKGANDTLEQLAEARDKETWGSINGLEKNLAFHLSGHILHSIYWHNM--TGDGGGEPLDKDGVGELADAIAESFGSFAGFRAQLTKAAATTQGSGWGVLAYEPLSGRLIVEQIYDHQGNVGQGST--PILVFDAWEHAFY 172
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM1_STAAW3.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS3.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR3.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN3.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM3.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC3.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB3.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA83.864e-2941.04Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA33.864e-2941.04Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODF_STRCO6.591e-2940.91Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coe... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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