FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYY
Sbjct:    3 IILPELPYAYDALEPQFDAETMSLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 74/179 (41.34%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYY
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYY 175          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 82/180 (45.56%), Postives = 100/180 (55.56%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPT---LVPLLGIDVWEHAYY 685
            TLP+L Y Y ALEP      M++HH KHHQAYV N N A+E L         Q L K+      +L  AI+ N GGH+NHS+FWK+L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ KA       PLLG+DVWEHAYY
Sbjct:    4 TLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLT-AIRNNVGGHLNHSLFWKSLKK-----GTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQ-ENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYY 176          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 76/179 (42.46%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYY 685
            TLP+L Y Y ALEP    + M++HH KHHQAY+ N N A+E   + L K   + +  L         A++ N GGHVNH++FWK L       G     +L  AI+  FGS+EA   +         GSGW WL L  E  +L V +TANQD PL+ K    V   P+L +DVWEHAYY
Sbjct:    4 TLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALEAHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKT-----GTTLQGALKEAIERDFGSVEAFQSEFEKAATTRVGSGWAWLVL--EEGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYY 175          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 74/179 (41.34%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYY
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYY 175          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 75/173 (43.35%), Postives = 105/173 (60.69%), Query Frame = 2
Query:  194 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQ-------GAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL-VPLLGIDVWEHAYY 685
            LPY  +AL+PAI  + M++H+ KHH+AYV N N  + + +  L+K D   ++QLQ        A++ NGGGH NH+ FW++LA  ++ G   P  +L   I   FGSL+A  QK +   +   GSGW WL + T   +L V +T NQD PL+  + T   PLLG+DVWEHAYY
Sbjct:   30 LPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQI-KTYPELDKTD---LIQLQKQISKYNTAVRNNGGGHFNHTFFWESLAATNKTG--QPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWL-IVTPNGKLAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYY 195          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM3_PLEBO (Superoxide dismutase [Mn] 3 (Fragment) OS=Plectonema boryanum GN=sodA3 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 70/178 (39.33%), Postives = 104/178 (58.43%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA-----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPYD  AL  AI  E M++HH +HHQ YV N N A           +E + + LN V  +    ++  I+ N GGH+NH+IFW+ ++P  +GGG+P   ++  AI+  FG+ E+  ++ +  G    GSGWVWL  + +  +L + +TANQD  + +     P++G DVWEHAYY
Sbjct:   35 LPPLPYDAGALSKAIDAETMRIHHDRHHQTYVDNLNTALKDQPNLQNLSIEAMLRDLNAVPEN----IRNTIRNNAGGHLNHTIFWQIMSP--DGGGQPT-GAIAQAINQTFGNFESFRKQFNEAGGDRFGSGWVWLVRNAQ-GQLQIVSTANQDNPIMEGN--YPIMGNDVWEHAYY 202          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY   ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L P  E  G     ++   I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPNLPYATDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLESKSIEEIVANLDSVPEDIQTAVRNNGGGHLNHSLFWELLTPNSEEKG-----TVVDKIKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYY
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANANAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDITPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 73/179 (40.78%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N      + +L       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P++G+DVWEHAYY
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYY 175          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM_STRP81.124e-2840.34Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_SHIFL1.124e-2841.34Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_PASMU1.124e-2845.56Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_PASHA1.124e-2842.46Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_ECO571.124e-2841.34Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_ACIAD1.124e-2843.35Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODM3_PLEBO1.124e-2839.33Superoxide dismutase [Mn] 3 (Fragment) OS=Plectone... [more]
SODM_STAHJ1.468e-2841.04Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]
SODM_STRP61.918e-2840.34Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_ECOLI1.918e-2840.78Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
back to top