FC930327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 2 Query: 179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 + LP+LPY Y ALEP E M LHH KHH YV N N A+E+ L + L V T ++ A+ NGGGH+NH++FW+ L+P + + AID FGS +A ++ +A GSGW WL ++ E +L + +TANQD +++ P+L +DVWEHAYY Sbjct: 3 IILPELPYAYDALEPQFDAETMSLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYY 170
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 74/179 (41.34%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685 TLP LPY Y ALEP + M++HH KHHQ YV N N A+E L + N + +L + ++ N GGH NHS+FWK L G L AI+ FGS++ + A+ GSGW WL L + +L V +TANQD PL+ +A + P+LG+DVWEHAYY Sbjct: 4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYY 175
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 82/180 (45.56%), Postives = 100/180 (55.56%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPT---LVPLLGIDVWEHAYY 685 TLP+L Y Y ALEP M++HH KHHQAYV N N A+E L Q L K+ +L AI+ N GGH+NHS+FWK+L G +L AI FGS+EA + A GSGW WL L E +L V +TANQD P++ KA PLLG+DVWEHAYY Sbjct: 4 TLPELGYAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLT-AIRNNVGGHLNHSLFWKSLKK-----GTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLVLQ-ENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYY 176
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 76/179 (42.46%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYY 685 TLP+L Y Y ALEP + M++HH KHHQAY+ N N A+E + L K + + L A++ N GGHVNH++FWK L G +L AI+ FGS+EA + GSGW WL L E +L V +TANQD PL+ K V P+L +DVWEHAYY Sbjct: 4 TLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALEAHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKT-----GTTLQGALKEAIERDFGSVEAFQSEFEKAATTRVGSGWAWLVL--EEGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYY 175
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 74/179 (41.34%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685 TLP LPY Y ALEP + M++HH KHHQ YV N N A+E L + N + +L + ++ N GGH NHS+FWK L G L AI+ FGS++ + A+ GSGW WL L + +L V +TANQD PL+ +A + P+LG+DVWEHAYY Sbjct: 4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYY 175
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 75/173 (43.35%), Postives = 105/173 (60.69%), Query Frame = 2 Query: 194 LPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQ-------GAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL-VPLLGIDVWEHAYY 685 LPY +AL+PAI + M++H+ KHH+AYV N N + + + L+K D ++QLQ A++ NGGGH NH+ FW++LA ++ G P +L I FGSL+A QK + + GSGW WL + T +L V +T NQD PL+ + T PLLG+DVWEHAYY Sbjct: 30 LPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQI-KTYPELDKTD---LIQLQKQISKYNTAVRNNGGGHFNHTFFWESLAATNKTG--QPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWL-IVTPNGKLAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYY 195
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM3_PLEBO (Superoxide dismutase [Mn] 3 (Fragment) OS=Plectonema boryanum GN=sodA3 PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28 Identity = 70/178 (39.33%), Postives = 104/178 (58.43%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA-----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPYD AL AI E M++HH +HHQ YV N N A +E + + LN V + ++ I+ N GGH+NH+IFW+ ++P +GGG+P ++ AI+ FG+ E+ ++ + G GSGWVWL + + +L + +TANQD + + P++G DVWEHAYY Sbjct: 35 LPPLPYDAGALSKAIDAETMRIHHDRHHQTYVDNLNTALKDQPNLQNLSIEAMLRDLNAVPEN----IRNTIRNNAGGHLNHTIFWQIMSP--DGGGQPT-GAIAQAINQTFGNFESFRKQFNEAGGDRFGSGWVWLVRNAQ-GQLQIVSTANQDNPIMEGN--YPIMGNDVWEHAYY 202
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28 Identity = 71/173 (41.04%), Postives = 99/173 (57.23%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP+LPY ALEP I + M++HH KHH YVT N AVE ++ S +Q A++ NGGGH+NHS+FW+ L P E G ++ I +GSL+ ++ + + AA GSGW WL ++ +L + TT NQD +T+ T P+LG+DVWEHAYY Sbjct: 5 LPNLPYATDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLESKSIEEIVANLDSVPEDIQTAVRNNGGGHLNHSLFWELLTPNSEEKG-----TVVDKIKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28 Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 2 Query: 179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 + LP+LPY Y ALEP E M LHH KHH YV N N A+E+ L + L V T ++ A+ NGGGH+NH++FW+ L+P + + AID FGS +A ++ +A GSGW WL ++ E +L + +TANQD +++ P+L +DVWEHAYY Sbjct: 3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANANAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDITPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYY 170
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28 Identity = 73/179 (40.78%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-------QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685 TLP LPY Y ALEP + M++HH KHHQ YV N N A+E L + N + +L + ++ N GGH NHS+FWK L G L AI+ FGS++ + A+ GSGW WL L + +L V +TANQD PL+ +A + P++G+DVWEHAYY Sbjct: 4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYY 175 The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 223
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bpback to top |