FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 70/174 (40.23%), Postives = 97/174 (55.75%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV-------EQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY  +ALEP I    M +HH KHH  YVT  N A+       E+  +AL     +    ++ A++ NGGGH NH++FW+ L+P    GG  P   L  AI+  FGS +   +K +   A   GSGW WL ++    +L + +T NQD  + +  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSDLDAVPENIRTAVRNNGGGHANHTLFWQILSP---NGGGAPTGELADAINAEFGSFDQFKEKFADAAANRFGSGWAWLVVND--GKLEITSTPNQDTPLMEGKT--PILGLDVWEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 73/175 (41.71%), Postives = 99/175 (56.57%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDT--STVVQLQGAIK----FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E+  +    ++   + V Q+   I+     NGGGH+NH++FW+ L+P          + +  AI+  FGS +      +A      GSGW WL +D E K L V +TANQD  +++   L P+L +DVWEHAYY
Sbjct:    3 ILLPDLPYAYDALEPYIDAETMTLHHDKHHATYVANANAALEKHPEIGENLEVLLADVEQIPADIRQSLINNGGGHLNHALFWELLSPEK----TKVTAEVAAAINEAFGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 70/167 (41.92%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY+Y+ALEP I  EIM+LHHQKHH  YV   N A+E++ + L       V  +     FN  GH+ H+IFW N+AP  +GGG  P   +   I+  FG  E      SA    ++G GW  L  D   + L +      + L+T    LVP+L IDVWEHAYY
Sbjct:    9 LPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIEKHLKGEIQIDVRAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGG-TPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYY 172          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYY
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYY
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 73/175 (41.71%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LPDLPY Y ALEP I  E M LHH KHH  YV N N A+E   ++ + L  +  D S + + ++ A+  NGGGH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYY
Sbjct:    3 IILPDLPYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 76/183 (41.53%), Postives = 101/183 (55.19%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK-----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685
            +LP LPY Y ALEP    + M++HH KHHQ YV N N            +VE L + L+KV      + +  ++ N GGH NHS+FWK L       G      L  AI+  FGS+++  +K  A  A   GSGW WL L  + K L V +TANQD PL+ +A    +  P++G+DVWEHAYY
Sbjct:    4 SLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLESFPELAKFSVEDLIKDLDKVP----AEKRTFMRNNAGGHANHSLFWKGLKL-----GTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKDDGK-LAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYY 176          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 70/176 (39.77%), Postives = 99/176 (56.25%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++  +  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYY
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQTLINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 74/180 (41.11%), Postives = 97/180 (53.89%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L         + + K+D       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYY
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELITKLD-QVPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYY 175          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 74/180 (41.11%), Postives = 97/180 (53.89%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYY 685
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L         + + K+D       +  ++ N GGH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYY
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELITKLD-QVPADKKTVLRNNAGGHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYY 175          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM_BACHD1.918e-2840.23Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_STRMU2.505e-2841.71Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODF_AERPE2.505e-2841.92Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODM_STRAG3.271e-2841.71Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA53.271e-2841.71Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA33.271e-2841.71Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_YEREN4.272e-2841.53Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]
SODM_STRP14.272e-2839.77Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_SALTY5.580e-2841.11Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SALTI5.580e-2841.11Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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