FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 70/174 (40.23%), Postives = 99/174 (56.90%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL--FQALNKVDTSTVV-----QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L  LPY Y ALEP I    MQLHH KHH AYV N N A+E+    Q+++  D  T +      ++  ++ N GGHVNH++FW+ +      G   P  ++  AI+  FGS +A  Q+ +  G    GSGWVWL + ++   L + +T NQD  + +  T  P++G DVWEHAYY
Sbjct:    5 LKPLPYAYDALEPYIDATTMQLHHDKHHAAYVNNLNAAIEKYSDLQSMSVEDLVTHLDRVPEDVRTTVRNNAGGHVNHTMFWEIMG---ANGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWL-VRSQQGDLQILSTPNQDSPLIEGHT--PIMGNDVWEHAYY 172          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 68/175 (38.86%), Postives = 103/175 (58.86%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LP+LPY Y ALEP    E M LHH KHH  YV N + A+E   ++ + L ++  D   + + ++ A+  NGGGH+NH++FW+ L+P      +     +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYY
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTDAALEKHPEIGENLEELLADVPKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDVTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYY 170          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 72/171 (42.11%), Postives = 91/171 (53.22%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPYDY+ALEP IS   ++ HH KHH AYV N+N AV   +   Q++  V  +       A  FN      NHS +W  + P   GGG  P  +L   I+  FGS +A ++     GA   GSGW WL LD     L V  T N +  +T   T  PLL +DVWEHAYY
Sbjct:    5 LPNLPYDYTALEPCISKSTLEFHHDKHHAAYVNNFNNAVAGTDLDNQSIEDVIKAVAGDASKAGIFNNAAQAWNHSFYWNCMKP---GGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVLDN--GTLKVTKTGNAENPMTAGQT--PLLTMDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PYRAE (Superoxide dismutase [Fe] OS=Pyrobaculum aerophilum GN=sod PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 68/168 (40.48%), Postives = 94/168 (55.95%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            TLP LPY Y+ALEP IS EIMQLHHQKHHQ YV   N A+E+L +         +  +   + F+  GH+ HSIFW N+AP  +GGG+ P   +   I+  FGS E   ++ S     ++G GW  L  +   ++L++      +  +  A     LL +DVWEHAYY
Sbjct:    8 TLPPLPYAYNALEPYISAEIMQLHHQKHHQGYVNGANAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIFWPNMAPPGKGGGK-PGGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAILVYEPLEEQLLILQIEKHN--LMHAADAQVLLALDVWEHAYY 172          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 122.094 bits (305), Expect = 2.769e-27
Identity = 76/181 (41.99%), Postives = 97/181 (53.59%), Query Frame = 2
Query:  176 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD-------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYY 685
            T  LP+L Y Y ALEP    E M++HH KHHQAYV N N  +E+  + L K         T    + + A++ N GGHVNH++FWK L       G     +L  AI   FGS+EA   +     A   GSGW WL L  E  +L V +TANQD P++ K    V   P+  +DVWEHAYY
Sbjct:    2 TYQLPELGYAYDALEPYFDKETMEIHHSKHHQAYVNNSNALLEKHPELLEKCPGALLKDLTQVPAEKRTAVRNNLGGHVNHTLFWKGLKT-----GTTLQGALKDAIIRDFGSVEAFQAEFEQAAATRFGSGWAWLVL--EEGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYY 175          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.769e-27
Identity = 71/179 (39.66%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  170 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQ-------GAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + +  LP L YDY  LEP I    + +HH KHH  YV N N A+E   +  NK     +  L+        A++ NGGGH  HS+FW+ ++P   GGGE P+  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYY
Sbjct:    1 MSSFQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGE-PNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYY 172          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.374e-26
Identity = 71/180 (39.44%), Postives = 99/180 (55.00%), Query Frame = 2
Query:  170 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNK--------VDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + +  LP L YDY  LEP I    + +HH KHH  YV N N  +E   +  NK        +DT    ++  A++ NGGGH  HS+FW+ ++P   GGGE P+  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYY
Sbjct:    1 MSSFQLPKLSYDYDELEPHIDSNTLSIHHGKHHATYVNNLNATLENYTELHNKSLEELLCNLDT-LPKEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGE-PNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYY 172          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_BUCAI (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sodA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.062e-26
Identity = 67/181 (37.02%), Postives = 99/181 (54.70%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYY 685
            LP LPY Y+ALEP    E M++HH KHHQ Y+ N N            +E+L   LN++    +++ + A++ N GGH+NHS FWK+L       G    + L   I+  FG+++   +K  +      GSGWVW  L  +   L + +T NQD PL+ K  +     P++G+D+WEHAYY
Sbjct:    5 LPSLPYSYNALEPFFDEETMKIHHTKHHQNYINNTNSILENTTFSSLPIEELISILNEI----ILEKKNALRNNAGGHINHSFFWKSLK-----SGTVLTNDLKIEIEKQFGTIDEFKEKFESVALNHFGSGWVW--LVNQNGVLSIVSTVNQDSPLMGKLISNTYGYPIIGLDIWEHAYY 174          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_METTH (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum GN=sod PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 70/170 (41.18%), Postives = 92/170 (54.12%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP IS E + +HHQKHHQAYV   N  + +L +A    ++ T V ++ A+K   F+ GG+V H  FW N+ P  E GGE P   L   I+  FGS E   ++ S    + +GSGW  L       RL +      +  V   P    LL +DVWEHAYY
Sbjct:   11 LPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALLRKLDEAR---ESDTDVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGE-PSGKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILLVLDVWEHAYY 174          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 68/167 (40.72%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY YSALEP IS +IM LHH KHHQ+YV   NKA  +L +A    +   +   +  + F+G GH  HSIFW ++   H  G   P  +L   ID  FGS  A  +  +     ++G GW  L       RL +  TA +  L ++   ++PLL +DVWEHAYY
Sbjct:   82 LPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNKAESELKKARATKNYDLITHWERELAFHGAGHYLHSIFWFSM---HPNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVWAPRSGRLEI-LTAEKHQLFSQW-DVIPLLPLDVWEHAYY 243          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM2_PLEBO9.517e-2840.23Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODM_STRPY1.243e-2738.86Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODF_SYNY31.243e-2742.11Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PYRAE2.120e-2740.48Superoxide dismutase [Fe] OS=Pyrobaculum aerophilu... [more]
SODM_HAEDU2.769e-2741.99Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]
SODM2_BACAN2.769e-2739.66Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODM2_BACCR1.374e-2639.44Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODM_BUCAI3.062e-2637.02Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODF_METTH3.999e-2641.18Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODF_BACSU6.821e-2640.72Probable superoxide dismutase [Fe] OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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