FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 72/171 (42.11%), Postives = 89/171 (52.05%), Query Frame = 2
Query:  176 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL-QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            T  L  LPY   AL P IS E ++ HH KH + YV N NK +  +       D +T+VQ  +G I  N G  +NH++++    P   G G  P   LG AID  FGS E   ++ +  G  L GSGWVWL  D   K L +E   N    V K   L PLLG DVWEHAYY
Sbjct:    2 THELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLI--IGTEFENADLNTIVQKSEGGIFNNAGQTLNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.163e-25
Identity = 68/178 (38.20%), Postives = 91/178 (51.12%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKA-----------VEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP L Y Y ALEP I    M++HH +HHQ YV   N A           VEQL + +  +       + GA++ +GGGH NHS+ W  ++P    GG  P   L   I    G  +A     +       GSGW WL + T   RL V+++ANQD  + +  T  P+LG+DVWEHAYY
Sbjct:    5 LPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPG----IHGAVRNHGGGHANHSLLWTVMSP---SGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTV-TPAGRLRVDSSANQDSPLMEGNT--PILGLDVWEHAYY 172          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYY
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNN--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 69/171 (40.35%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL---FQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LP+DY+AL P I+ E ++ HH KHH AYV NYN AV+      Q +  V  +       A  FN      NHS +W ++ P    GG  P  +L   I   FGS E  + +     A   GSGW WL LD     L +  T N D  +    T  PLL IDVWEHAYY
Sbjct:    5 LPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDLDGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKP---NGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLDN--GTLKITKTGNADTPIAHGQT--PLLTIDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYY
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAAS (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MSSA476) GN=sodM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYY
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAAR (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MRSA252) GN=sodM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYY
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAAN (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain N315) GN=sodM PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYY
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAAM (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodM PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYY
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAAC (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain COL) GN=sodM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY Y ALEP I    M+ HH KHH  YVT  N  VE           +   L+KV  +    ++ +++ NGGGH NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYY
Sbjct:    5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODF_PORGI8.908e-2642.11Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_BORPE1.163e-2538.20Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]
SODM2_STAAB1.985e-2538.42Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODF_SYNE71.985e-2540.35Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODM2_STAAW2.592e-2538.42Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAS2.592e-2538.42Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAR2.592e-2538.42Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAN2.592e-2538.42Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAM2.592e-2538.42Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAC2.592e-2538.42Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
back to top