FC930327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAA8 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodM PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25 Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP+LPY Y ALEP I M+ HH KHH YVT N VE + L+KV + ++ +++ NGGGH NHS+FW+ L+P E G I +G+L+ + + + L GSGW WL ++ +L + TT NQD +T+ T P+L DVWEHAYY Sbjct: 5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_STAA3 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain USA300) GN=sodM PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25 Identity = 68/177 (38.42%), Postives = 94/177 (53.11%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE----------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP+LPY Y ALEP I M+ HH KHH YVT N VE + L+KV + ++ +++ NGGGH NHS+FW+ L+P E G I +G+L+ + + + L GSGW WL ++ +L + TT NQD +T+ T P+L DVWEHAYY Sbjct: 5 LPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEA----MRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVND--GKLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYY 168
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCSC (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium scrofulaceum GN=sodA PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25 Identity = 63/146 (43.15%), Postives = 82/146 (56.16%), Query Frame = 2 Query: 248 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LHH KHH YV N AV +L +A D + + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+Y Sbjct: 1 LHHSKHHATYVKGVNDAVAKLQEARANDDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFY 141
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCIT (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium intracellulare GN=sodA PE=3 SV=2) HSP 1 Score: 114.775 bits (286), Expect = 4.421e-25 Identity = 62/146 (42.47%), Postives = 82/146 (56.16%), Query Frame = 2 Query: 248 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LHH KHH YV N A+ +L +A D + + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+Y Sbjct: 1 LHHSKHHATYVKGVNDALSKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDRFRAQFSAAANGLQGSGWAVLGYDTLGNRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFY 141
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_HALSA (Superoxide dismutase [Mn] 1 OS=Halobacterium salinarium GN=sod1 PE=1 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 9.849e-25 Identity = 63/167 (37.72%), Postives = 85/167 (50.90%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPYDY ALEP IS +++ HH HHQ YV +N A E L + D ++ G + NG GH+ H++FW++++P GG+ P +L I FGS E + E AA SGW L D+ L N D P+L +DVWEH+YY Sbjct: 6 LPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGWNDAEETLAENRETGDHASTAGALGDVTHNGSGHILHTLFWQSMSP---AGGDEPSGALADRIAADFGSYEN--WRAEFEAAASAASGWALLVYDSHSNTLRNVAVDNHDEGALWGSH--PILALDVWEHSYY 165
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.849e-25 Identity = 63/167 (37.72%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP+LPY Y ALEP IS E +++HH+KHHQAYV N + +L A + + + F+ GG+V H FW N+ P E GGE P L I+ FGS + ++ S + +GSGW L RL + + V P L+ +DVWEHAYY Sbjct: 8 LPELPYPYDALEPYISEEQLRIHHEKHHQAYVDGANGVLRKLDDARENGEEVDIKAALKELSFHVGGYVLHLFFWGNMGPADECGGE-PDGRLAEYIEKDFGSFQRFKKEFSQAAVSAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILMVLDVWEHAYY 171
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3) HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24 Identity = 68/171 (39.77%), Postives = 89/171 (52.05%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ----LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP+LPYDY AL P +S E ++ HH KHH AYVTN NK E+ L+ + +V+ + N G H NH FWK + GGG L AI + G + SA GA GSGW WL + K + +T ++PLV A P+LG+DVWEH+YY Sbjct: 5 LPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEE--AGLSDLSLEDIVKKSYGTNQPLFNNAGQHYNHVHFWKWMK--KGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWLSVKNG-KLEISKTPNGENPLVHGA---TPILGVDVWEHSYY 167
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCKA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium kansasii GN=sodA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24 Identity = 61/147 (41.50%), Postives = 83/147 (56.46%), Query Frame = 2 Query: 248 LHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYY 685 LHH KHH YV N AV +L +A K D S ++ + + FN GHVNH+I+WKNL+P GG+ P L AID FGS + + A +QGSGW LG DT +L++ + T P ++PLL +D+WEHA+Y Sbjct: 1 LHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIIPLLLLDMWEHAFY 141
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24 Identity = 67/168 (39.88%), Postives = 87/168 (51.79%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV-QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LPDLPY +ALEP IS E ++ HH KHH+AYV NK +E K ++ + G I N H NH+ +W ++P +GGG+ P L AID FGSLE + GSGW WL D K V+ T ++P+ PL+ DVWEHAYY Sbjct: 5 LPDLPYKLNALEPHISQETLEYHHGKHHRAYVNKLNKLIEG--TPFEKEPLEEIIRKSDGGIFNNAAQHWNHTFYWHCMSP--DGGGD-PSGELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCMA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium malmoense GN=sodA PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24 Identity = 62/143 (43.36%), Postives = 81/143 (56.64%), Query Frame = 2 Query: 251 HHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 679 HH KHH AYV N AV +L +A K D S + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG D+ +L+ +Q V ++PLL +D+WEHA Sbjct: 1 HHSKHHAAYVKGVNDAVAKLEEARAKDDHSAIFLNEKNLAFHLGGHVNHSIWWKNLSP---NGGDKPTGDLASAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDSLGDKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138 The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 223
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bpback to top |