FC930327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22 Identity = 64/169 (37.87%), Postives = 84/169 (49.70%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLP LPY AL P IS E ++ H+ KHHQ YVTN N + + +V+ FN V NH+ +W +L+P GGGE P +L AI +GS++A + + A GSGW WL + +V T+ PL T LL DVWEHAYY Sbjct: 4 TLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPG--TEFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNSLSP--NGGGE-PSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKA---LLTCDVWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22 Identity = 67/168 (39.88%), Postives = 85/168 (50.60%), Query Frame = 2 Query: 197 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAI--KFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYY 685 PY ALEP +S + H KHH+AYV N NK ++ D V +GA FN NH FW+++ P GGGEP L I+ FGS +A +++ A A GSGW WL E K+L + T N ++PLV PLL IDVWEHAYY Sbjct: 8 PYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTELDGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKP--NGGGEPSGELLE-LINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVL---GYTPLLTIDVWEHAYY 169
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22 Identity = 66/168 (39.29%), Postives = 81/168 (48.21%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ A +V+ FN V NH+ +W LAP GGEP L AI FGS + + GSGW WL + K +V T+ PL T A PLL +DVWEHAYY Sbjct: 5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22 Identity = 66/168 (39.29%), Postives = 81/168 (48.21%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ A +V+ FN V NH+ +W LAP GGEP L AI FGS + + GSGW WL + K +V T+ PL T A PLL +DVWEHAYY Sbjct: 5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCSZ (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium szulgai GN=sodA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22 Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 2 Query: 254 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 679 H KHH YV N AV +L +A + D S+++ + + FN GHVNH+I+WKNL+P GG+ P L AID FGS + + A +QGSGW LG DT +L++ + T P +VPLL +D+WEHA Sbjct: 2 HSKHHATYVKGANDAVAKLEEARAQEDFSSILLSEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDTFSAQFHAASTTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SULAC (Superoxide dismutase [Fe] OS=Sulfolobus acidocaldarius GN=sod PE=1 SV=3) HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22 Identity = 61/175 (34.86%), Postives = 89/175 (50.86%), Query Frame = 2 Query: 170 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 L+ P LPY ALEP IS +I+ +H+ HH+ YV N +++L + + LQG ++ FN GH H+I+W N+AP +GGG+ P +L I+ +GS + Q S +L GSGW L D E L + T N + L +L +D +EHAYY Sbjct: 7 LKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYDLQGILRGLTFNINGHKLHAIYWNNMAPAGKGGGK-PGGALADLINKQYGSFDRFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVENH--FMNHIAELPVILIVDEFEHAYY 178
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21 Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ A +++ FN V NH+ +W LAP GGEP + AI FGS + + GSGW WL +++ K +V T+ PL T A PLL +DVWEHAYY Sbjct: 5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21 Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ A +++ FN V NH+ +W LAP GGEP + AI FGS + + GSGW WL +++ K +V T+ PL T A PLL +DVWEHAYY Sbjct: 5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21 Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ A +++ FN V NH+ +W LAP GGEP + AI FGS + + GSGW WL +++ K +V T+ PL T A PLL +DVWEHAYY Sbjct: 5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21 Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY AL P IS E ++ H+ KHHQ YVTN N ++ A +++ FN V NH+ +W LAP GGEP + AI FGS + + GSGW WL +++ K +V T+ PL T A PLL +DVWEHAYY Sbjct: 5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164 The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 223
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bpback to top |