FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 64/169 (37.87%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            TLP LPY   AL P IS E ++ H+ KHHQ YVTN N  +         +    +V+      FN    V NH+ +W +L+P   GGGE P  +L  AI   +GS++A  +  +   A   GSGW WL    +    +V T+    PL T       LL  DVWEHAYY
Sbjct:    4 TLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPG--TEFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNSLSP--NGGGE-PSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKA---LLTCDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 67/168 (39.88%), Postives = 85/168 (50.60%), Query Frame = 2
Query:  197 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAI--KFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYY 685
            PY   ALEP +S    + H  KHH+AYV N NK ++          D   V   +GA    FN      NH  FW+++ P   GGGEP    L   I+  FGS +A +++  A  A   GSGW WL    E K+L +  T N ++PLV       PLL IDVWEHAYY
Sbjct:    8 PYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTELDGKTLEDIILVTYNKGAPLPAFNNAAQAWNHQFFWESMKP--NGGGEPSGELLE-LINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVL---GYTPLLTIDVWEHAYY 169          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 66/168 (39.29%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +V+      FN    V NH+ +W  LAP    GGEP    L  AI   FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY
Sbjct:    5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 66/168 (39.29%), Postives = 81/168 (48.21%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +V+      FN    V NH+ +W  LAP    GGEP    L  AI   FGS      + +       GSGW WL    + K  +V T+    PL T A    PLL +DVWEHAYY
Sbjct:    5 LPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCSZ (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium szulgai GN=sodA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 58/143 (40.56%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  254 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 679
            H KHH  YV   N AV +L +A  + D S+++  +  + FN  GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA
Sbjct:    2 HSKHHATYVKGANDAVAKLEEARAQEDFSSILLSEKNLAFNLAGHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDTFSAQFHAASTTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SULAC (Superoxide dismutase [Fe] OS=Sulfolobus acidocaldarius GN=sod PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 61/175 (34.86%), Postives = 89/175 (50.86%), Query Frame = 2
Query:  170 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L+    P LPY   ALEP IS +I+ +H+  HH+ YV   N  +++L + +          LQG ++   FN  GH  H+I+W N+AP  +GGG+ P  +L   I+  +GS +   Q  S    +L GSGW  L  D E   L + T  N    +     L  +L +D +EHAYY
Sbjct:    7 LKRYEFPQLPYKVDALEPYISKDIIDVHYNGHHKGYVNGANSLLDRLEKLIKGDLPQGQYDLQGILRGLTFNINGHKLHAIYWNNMAPAGKGGGK-PGGALADLINKQYGSFDRFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVENH--FMNHIAELPVILIVDEFEHAYY 178          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI   FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI   FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI   FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 64/168 (38.10%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   AL P IS E ++ H+ KHHQ YVTN N  ++    A        +++      FN    V NH+ +W  LAP    GGEP    +  AI   FGS      + +       GSGW WL  +++ K  +V T+    PL T A    PLL +DVWEHAYY
Sbjct:    5 LPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKG--TAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDA---TPLLTVDVWEHAYY 164          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODF_BORPE2.682e-2237.87Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_NICPL3.503e-2239.88Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_SALTY4.575e-2239.29Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI4.575e-2239.29Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODM_MYCSZ7.804e-2240.56Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_SULAC7.804e-2234.86Superoxide dismutase [Fe] OS=Sulfolobus acidocalda... [more]
SODF_SHIFL1.019e-2138.10Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI1.019e-2138.10Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL61.019e-2138.10Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO571.019e-2138.10Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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