FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ACIAM (Superoxide dismutase [Fe] OS=Acidianus ambivalens GN=sod PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 62/175 (35.43%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  170 LQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L+   LP LPY+  ALEP IS EI+ +H+  HH+ YV   N  V+++ + L    +S    +QG ++   FN  GH  HS++W+N+AP  +GGG+ P   +G  I+  +GS E      +    +L G+GW  L  + E   L + T  N          L  LL +D +EHAYY
Sbjct:    7 LKKYELPPLPYNLDALEPYISKEIIDVHYNGHHRGYVNGANSFVDRVNKILKGEISSGQYDIQGLLRGLVFNINGHKLHSLYWQNMAPAGKGGGK-PGGVIGDLIEKQYGSFEKFKALFTEAANSLPGTGWTVLYYEVENGNLQIMTFENH--FQNHIAELPILLILDEFEHAYY 178          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 63/184 (34.24%), Postives = 93/184 (50.54%), Query Frame = 2
Query:  176 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNK----------AVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTK---APTLVPLLGIDVWEHAYY 685
            T  LP LPY Y++LEP    + M +HH +HHQAY+ N N            +E+L   LN +     + LQ     N GGH+NHS+FWK L                  ++ +F S++   ++      +  GSGW+WL +      L + TT NQ+ PL+ K     + +P+LG+D+WEHAYY
Sbjct:    2 TYVLPSLPYSYNSLEPFFDEKTMIIHHTRHHQAYINNTNSILNGTHYENLLIEELISKLNILSIENKLALQN----NAGGHINHSLFWKWLKL-----NTILKDDFKIILEKNFKSVDFFKKQFEKIALSHFGSGWIWL-IKKYDNTLRIVTTVNQNTPLMGKEISGISGIPILGLDLWEHAYY 175          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.331e-21
Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY+  + +P  + E  + HH KHH AYV N N  ++   + L K +   ++    Q Q    FN    V NH+ FW ++ P   GGG+P    L   I+  FGS E   ++  AE     GSGW WL       RL +  TAN    +  A  + PLL  DVWEHAYY
Sbjct:   16 LPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLKDK-EELQKKNLEEIIDWSSQNQNIAIFNNAAQVWNHTFFWHSIKP--NGGGKPSGKILK-QINEDFGSFEEFCEQFKAEATGQFGSGWAWLVYHN--NRLQIVKTANAGTPI--ANGMQPLLACDVWEHAYY 179          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCPH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium phlei GN=sodA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 2
Query:  254 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 679
            H KHH  YV   N A+ +L +A    D   +   +  + F+ GGHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA
Sbjct:    2 HSKHHATYVKGVNDAIAKLEEARANGDHGAIFLHEKNLAFHLGGHVNHTIWWKNLSP---HGGDKPTGDLAAAIDDQFGSFDNFRAQFTAAANGLQGSGWAVLGYDTLGDRLLTFQLYDQQANVPLG--IIPLLLVDMWEHA 138          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 63/167 (37.72%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY+ +ALEP IS E ++ HH KHH  YV N N  +    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T    +PL T   T  PLL  DVWEHAYY
Sbjct:    5 LPPLPYEKNALEPHISAETLEYHHDKHHNTYVVNLNNLIPGT-EFEGKSLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGNPL-TSGDT--PLLTCDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SULSO (Superoxide dismutase [Fe] OS=Sulfolobus solfataricus GN=sod PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 59/170 (34.71%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   ALEP IS +I+ +H+  HH+ YV   N  +E+L + +     +    +QG I+   FN  GH  H+++W+N+AP  +GGG+ P  +L   I+  +GS +   Q  +    +L G+GW  L  DTE   L + T  N          +  +L +D +EHAYY
Sbjct:   12 LPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLLERLEKVVKGDLQTGQYDIQGIIRGLTFNINGHKLHALYWENMAPSGKGGGK-PGGALADLINKQYGSFDRFKQVFTETANSLPGTGWAVLYYDTESGNLQIMTFENH--FQNHIAEIPIILILDEFEHAYY 178          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 63/172 (36.63%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV----QLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LPDLPY+  + +P  + E    HH KHH  YV N N  ++   + L K D   ++    Q   A  FN    + NH+ FW ++ P  +GGG+P    L   I+  FGS E   ++   E     GSGW WL       RL +  TAN    +  A  + PLL  DVWEHAYY
Sbjct:   16 LPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDK-EELQKKDLEEIIEWSSQNSNAAIFNNAAQIWNHTFFWHSIKP--QGGGKPSGKILE-QINKDFGSFEEFCEQFKQEAVGQFGSGWAWLIYHD--NRLQIIKTANAGTPI--AHGMKPLLACDVWEHAYY 179          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM2_HALVO (Superoxide dismutase [Mn] 2 OS=Halobacterium volcanii GN=sod2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 62/169 (36.69%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L  LPY+Y ALEP IS +++  HH  HHQ YV  +N   E L +     +  +       +  NG GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L        P+L +DVWEH+YY
Sbjct:    5 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETLAENREAGEFGSSAGAVRNVTHNGSGHILHDLFWQNMSP---EGGDEPEGLLAERIAEDFGSYEA--WKGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSH----PILALDVWEHSYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_HALVO (Superoxide dismutase [Mn] 1 OS=Halobacterium volcanii GN=sod1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 62/169 (36.69%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L  LPY+Y ALEP IS +++  HH  HHQ YV  +N   E L +     +  +       +  NG GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L        P+L +DVWEH+YY
Sbjct:    6 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETLAENREAGEFGSSAGAVRNVTHNGSGHILHDLFWQNMSP---EGGDEPEGLLAERIAEDFGSYEA--WKGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSH----PILALDVWEHSYY 165          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 63/167 (37.72%), Postives = 80/167 (47.90%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  L+P   GGG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY
Sbjct:    5 LPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKSSSGGIFNNAAQVWNHTFYWNCLSP--NGGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYY 164          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODF_ACIAM1.019e-2135.43Superoxide dismutase [Fe] OS=Acidianus ambivalens ... [more]
SODM_BUCBP1.331e-2134.24Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODF_RICBR1.331e-2137.21Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODM_MYCPH2.271e-2140.14Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_PSEAE3.873e-2137.72Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]
SODF_SULSO8.628e-2134.71Superoxide dismutase [Fe] OS=Sulfolobus solfataric... [more]
SODF_RICCN8.628e-2136.63Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODM2_HALVO1.127e-2036.69Superoxide dismutase [Mn] 2 OS=Halobacterium volca... [more]
SODM1_HALVO1.127e-2036.69Superoxide dismutase [Mn] 1 OS=Halobacterium volca... [more]
SODF_PSEPK2.510e-2037.72Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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