FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 60/169 (35.50%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGE PH  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGE-PHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYY 165          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 60/169 (35.50%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGE PH  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGE-PHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYY 165          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 60/169 (35.50%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGE PH  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGE-PHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYY 165          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 60/169 (35.50%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGE PH  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGE-PHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYY 165          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.279e-20
Identity = 62/170 (36.47%), Postives = 84/170 (49.41%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN---KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY Y+ALEP IS E ++ HH KHH  YV   N   K  EQ  + L ++      Q   AI  N     NH+ +WK +     G G  P   L   +   FG LE   +K + +     GSGW WL ++ + K  +++T    +P+      + PLL  DVWEHAYY
Sbjct:    5 LPQLPYAYNALEPHISKETLEFHHDKHHATYVNKLNGLVKGTEQEHKTLEELIKQKPTQ---AIYNNAAQAWNHAFYWKCMC----GCGVKPSEQLIAKLTAAFGGLEEFKKKFTEKAVGHFGSGWCWL-VEHDGKLEIIDTHDAVNPMTN---GMKPLLTCDVWEHAYY 163          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 63/167 (37.72%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + AL+P IS E ++ HH KHH  YV N N  V    +   K     V    G I  N     NH+ +W  LAP    GG+P   +L  AI+  FGS +   ++ +       GSGW WL    +    +  T     PL T   T  PLL  DVWEHAYY
Sbjct:    5 LPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGT-EFEGKTLEEIVKTSSGGIFNNAAQVWNHTFYWNCLAP--NAGGQPT-GALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLVKKADGSLALASTIGAGCPL-TSGDT--PLLTCDVWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 58/172 (33.72%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-----LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LPDLPYD  + +P  + E    HH KHH +YV N N  ++   + L K D   +++      + AI  N     NH+ FW ++ P   GGG+ P   +   I   FGS E    +   E     GSGW W+ +  + K  +++T+    P+V     + P+L  DVWEHAYY
Sbjct:   16 LPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDR-EELQKKDLEEIIEWSSQNAEVAILNNASQIWNHTFFWYSIKP--HGGGK-PSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWV-VYHDNKLQIIKTSNAGTPIVN---FMKPILACDVWEHAYY 179          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 57/167 (34.13%), Postives = 81/167 (48.50%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY   ALEP IS E ++ HH KHH  YV   N  +    +  NK     V    G +  N     NH+ +W +L+P    GG  P  ++  AI+  +GS +A  + ++ +     GS W WL    +    +V T+    PL     T  P+L +D+WEHAYY
Sbjct:    4 LPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGT-KFENKSLEEIVCSSDGGVFNNAAQIWNHTFYWNSLSP---NGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVT--PILTVDLWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 68/173 (39.31%), Postives = 82/173 (47.40%), Query Frame = 2
Query:  182 TLPDLPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ---ALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            T P LP+   ALEP  +  E    H+ KHH AYVTN NK VE       +L  V   +         FN    V NH+ FW  L     GGG  P   L   ID  FGSL+   ++ S   A   GSGW WL +D      V +T   ++PLV       PLL +DVWEHAYY
Sbjct:    4 TQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPMESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFWNCLKA---GGGGAPTGELAAKIDAAFGSLDKFKEEFSNAAATQFGSGWAWL-VDDGGTLKVTKTPNAENPLVHGQK---PLLTLDVWEHAYY 169          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.246e-19
Identity = 63/169 (37.28%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  194 LPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIK---FNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LPYD++ALE   + GE  + H+ KHH+AYV N NK  +    A   ++    +  + A K   FN    V NH+ FW +L P    GG  P       I+  FGS + L ++ S   A   GSGW WL +D      V +T   ++PL   A     LL +DVWEHAYY
Sbjct:    8 LPYDFNALEQYGMKGETFEYHYGKHHKAYVDNLNKLTDGTELADKSLEEVIQIAFKDASKAGIFNNAAQVWNHTFFWNSLKPA---GGGAPTGEFAAKINQDFGSFDKLKEEFSNAAATQFGSGWAWL-IDDGGTLKVTKTPNAENPL---AHGQKALLTLDVWEHAYY 169          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODF_PLAVI3.279e-2035.50Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAFX3.279e-2035.50Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA3.279e-2035.50Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF73.279e-2035.50Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_ENTHI3.279e-2036.47Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODF_PSEPU5.593e-2037.72Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_RICPR9.540e-2033.72Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_PSEHT9.540e-2034.13Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_PLEBO9.540e-2039.31Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_ANASP1.246e-1937.28Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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