FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STROR (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus oralis GN=sodA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661
            I  E M LHH KHHQAYV N N A+E      +  +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:    2 IDAETMHLHHDKHHQAYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 59/168 (35.12%), Postives = 84/168 (50.00%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAY 682
            +TLP L Y  +AL P IS E +  H+ KHH  YV   N  ++    A  K     V +  GAI  N     NH+ +W ++ P  + GGE PH  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAY
Sbjct:    3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGE-PHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 57/172 (33.14%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG----AIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LPDLPY   + +P  + E    HH KHH +YV N N  ++   + L K D   +++          FN    + NH+ FW ++ P   GGG+ P   +   I   FGS E   ++   E     GSGWVW+  +   K  +++T+    P+V     + P+L  DVWEHAYY
Sbjct:   16 LPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDR-EELQKKDLEGIIKWSSKNSEVTVFNNASQIWNHTFFWYSIKP--HGGGK-PSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYNNN-KLQIIKTSNADTPIVN---LMKPILVCDVWEHAYY 179          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRMT (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus mitis GN=sodA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 58/151 (38.41%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661
            I  E M LHH KHHQ YV N N A+E+        +AL     S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:    2 IDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 62/167 (37.13%), Postives = 82/167 (49.10%), Query Frame = 2
Query:  197 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            P+   ALEP +S + ++ H  KHH+AYV N  K V   E   + L  +  ST         FN      NH  FW+++ P   GGG  P   L   ++  F S E   ++ +A  A   G+GW WL    E K  VV+T    +PLV  +    PLL IDVWEHAYY
Sbjct:   17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKP---GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLVLGS---FPLLTIDVWEHAYY 176          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRPA (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus parasanguis GN=sodA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661
            I  E M LHH KHHQ YV N N A+E+       L   L  V+ S    ++ A+  NGGGH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW W  ++ E K L V +TANQD  +++  T  P+LG+
Sbjct:    2 IDEETMHLHHDKHHQTYVNNVNAALEKHPEIGEDLESLLADVE-SIPADIRQAVINNGGGHLNHALFWELMTPEQTA----PSAELAAAIDATFGSFEDFKAAFTAAATTRFGSGWAWSVVNKEGK-LEVTSTANQDTPLSEGKT--PILGL 145          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 59/168 (35.12%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LP+  +ALEP IS E ++ H+ KHH  YV   N  VE     L +     +++      FN    V NH+ +W  LAP    GGEP    +  AI+  FGS      K +       GS W WL  +      +V T+    P+  +  T  PLL +D+WEHAYY
Sbjct:    4 LPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEG--TELAEKSLEEIIKTSTGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLVKNANGSLAIVNTSNAGCPITEEGVT--PLLTVDLWEHAYY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 56/172 (32.56%), Postives = 84/172 (48.84%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVH----EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L  LPYD +A    +S E    HH KHH  YVTN N  ++  +      D  ++++      FN    V NH  ++  + P+      G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIK--YTEFASKDLVSIIKSSSGGVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITE--DKVPLLVVDVWEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRSL (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus salivarius GN=sodA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVT--KAPTL 643
            I  E M LHH KHH  YV N N A+E+        +AL          ++ A+  NGGGH+NH++FW+ L+P  +     P + +  AI+  FGS EA  +  +A      GSGW WL ++ E K L V +TANQD  ++  K P L
Sbjct:    2 IDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVEQIPADIRQALINNGGGHLNHALFWELLSPEKQ----EPTAEVAAAINEAFGSFEAFQEAFTAAATTRFGSGWAWLVVNDEGK-LEVVSTANQDTPISDGKKPIL 143          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 59/174 (33.91%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  185 LPDLPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQ---LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + AL    +S E ++ HH  HH+AYV N NK +   E   +++ ++   T       Q  I  N   H NH+ FW+ + P   G  +    +L  A+   FGS+    +  +A GA   GSGW WL  D++    + +T    +PL         LLG DVWEH+YY
Sbjct:    5 LPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTEWEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGP---GEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLVKDSDGALKITKTENGVNPLCFGQ---TALLGCDVWEHSYY 172          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM_STROR1.627e-1939.07Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_PLAMA2.125e-1935.12Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]
SODF_RICTY3.625e-1933.14Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODM_STRMT4.734e-1938.41Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_ARATH1.055e-1837.13Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODM_STRPA1.378e-1838.82Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_PHOLE1.378e-1835.12Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_CAMCO4.008e-1832.56Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM_STRSL2.598e-1738.10Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_RHOCA4.431e-1733.91Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
back to top