FC930327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STROR (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus oralis GN=sodA PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19 Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 2 Query: 227 ISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661 I E M LHH KHHQAYV N N A+E + +AL S ++ A+ NGGGH+NH++FW+ + P P + L AID FGS E +A GSGW WL ++ E K L V +TANQD +++ P+LG+ Sbjct: 2 IDAETMHLHHDKHHQAYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19 Identity = 59/168 (35.12%), Postives = 84/168 (50.00%), Query Frame = 2 Query: 179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAY 682 +TLP L Y +AL P IS E + H+ KHH YV N ++ A K V + GAI N NH+ +W ++ P + GGE PH + I FGS ++ S GSGW WL L+ K ++++T +P+ K T +P+L D+WEHAY Sbjct: 3 ITLPKLKYALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFA-EKSLLDIVKESSGAIFNNAAQIWNHTFYWDSMGP--DCGGE-PHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19 Identity = 57/172 (33.14%), Postives = 84/172 (48.84%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG----AIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LPDLPY + +P + E HH KHH +YV N N ++ + L K D +++ FN + NH+ FW ++ P GGG+ P + I FGS E ++ E GSGWVW+ + K +++T+ P+V + P+L DVWEHAYY Sbjct: 16 LPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDR-EELQKKDLEGIIKWSSKNSEVTVFNNASQIWNHTFFWYSIKP--HGGGK-PSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVYNNN-KLQIIKTSNADTPIVN---LMKPILVCDVWEHAYY 179
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRMT (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus mitis GN=sodA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19 Identity = 58/151 (38.41%), Postives = 79/151 (52.32%), Query Frame = 2 Query: 227 ISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661 I E M LHH KHHQ YV N N A+E+ +AL S ++ A+ NGGGH+NH++FW+ + P P + L AID FGS E +A GSGW WL ++ E K L V +TANQD +++ P+LG+ Sbjct: 2 IDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4) HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18 Identity = 62/167 (37.13%), Postives = 82/167 (49.10%), Query Frame = 2 Query: 197 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 P+ ALEP +S + ++ H KHH+AYV N K V E + L + ST FN NH FW+++ P GGG P L ++ F S E ++ +A A G+GW WL E K VV+T +PLV + PLL IDVWEHAYY Sbjct: 17 PFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKP---GGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSNE-KLKVVKTPNAVNPLVLGS---FPLLTIDVWEHAYY 176
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRPA (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus parasanguis GN=sodA PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18 Identity = 59/152 (38.82%), Postives = 80/152 (52.63%), Query Frame = 2 Query: 227 ISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661 I E M LHH KHHQ YV N N A+E+ L L V+ S ++ A+ NGGGH+NH++FW+ + P P + L AID FGS E +A GSGW W ++ E K L V +TANQD +++ T P+LG+ Sbjct: 2 IDEETMHLHHDKHHQTYVNNVNAALEKHPEIGEDLESLLADVE-SIPADIRQAVINNGGGHLNHALFWELMTPEQTA----PSAELAAAIDATFGSFEDFKAAFTAAATTRFGSGWAWSVVNKEGK-LEVTSTANQDTPLSEGKT--PILGL 145
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18 Identity = 59/168 (35.12%), Postives = 80/168 (47.62%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LP+ +ALEP IS E ++ H+ KHH YV N VE L + +++ FN V NH+ +W LAP GGEP + AI+ FGS K + GS W WL + +V T+ P+ + T PLL +D+WEHAYY Sbjct: 4 LPALPFAMNALEPHISQETLEYHYGKHHNTYVVKLNGLVEG--TELAEKSLEEIIKTSTGGVFNNAAQVWNHTFYWNCLAP--NAGGEPT-GEVAAAIEKAFGSFAEFKAKFTDSAINNFGSSWTWLVKNANGSLAIVNTSNAGCPITEEGVT--PLLTVDLWEHAYY 164
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18 Identity = 56/172 (32.56%), Postives = 84/172 (48.84%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVH----EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 L LPYD +A +S E HH KHH YVTN N ++ + D ++++ FN V NH ++ + P+ G + ++L A++ FGSLE + + GSGW WL +T+ ++L T+N +T+ VPLL +DVWEHAYY Sbjct: 4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIK--YTEFASKDLVSIIKSSSGGVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITE--DKVPLLVVDVWEHAYY 171
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRSL (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus salivarius GN=sodA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.598e-17 Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 2 Query: 227 ISGEIMQLHHQKHHQAYVTNYNKAVEQL------FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVT--KAPTL 643 I E M LHH KHH YV N N A+E+ +AL ++ A+ NGGGH+NH++FW+ L+P + P + + AI+ FGS EA + +A GSGW WL ++ E K L V +TANQD ++ K P L Sbjct: 2 IDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVEQIPADIRQALINNGGGHLNHALFWELLSPEKQ----EPTAEVAAAINEAFGSFEAFQEAFTAAATTRFGSGWAWLVVNDEGK-LEVVSTANQDTPISDGKKPIL 143
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17 Identity = 59/174 (33.91%), Postives = 85/174 (48.85%), Query Frame = 2 Query: 185 LPDLPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQ---LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY + AL +S E ++ HH HH+AYV N NK + E +++ ++ T Q I N H NH+ FW+ + P G + +L A+ FGS+ + +A GA GSGW WL D++ + +T +PL LLG DVWEH+YY Sbjct: 5 LPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTEWEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGP---GEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLVKDSDGALKITKTENGVNPLCFGQ---TALLGCDVWEHSYY 172 The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 223
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bpback to top |