FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 56/171 (32.75%), Postives = 81/171 (47.37%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH----EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L  LPYD +A    +S E    HH KHH  YVTN N  ++   +   K   S +    G +  N     NH  ++  + P       G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDT-EFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITE--DKVPLLVVDVWEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 56/171 (32.75%), Postives = 81/171 (47.37%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH----EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            L  LPYD +A    +S E    HH KHH  YVTN N  ++   +   K   S +    G +  N     NH  ++  + P       G  +   ++L  A++  FGSLE    +       + GSGW WL  +T+ ++L    T+N    +T+    VPLL +DVWEHAYY
Sbjct:    4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDT-EFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITE--DKVPLLVVDVWEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 54/170 (31.76%), Postives = 82/170 (48.24%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            TL +LP+   ++   +S      HH KHHQ YV N N  ++   F+  +  D  T  +  G +  N     NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY
Sbjct:    3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILT--KSSGGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYY 163          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 60/183 (32.79%), Postives = 84/183 (45.90%), Query Frame = 2
Query:  197 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGL----------------DTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            PY  + LEP +S + ++ H  KHH+ YV N  K V   E   ++L ++  ++  +      FN    V NH  FW+ + P   GGG  P   L   I+  FGS    + +  A  A   GSGW WL                  D + K +V+++    +PLV       PLL IDVWEHAYY
Sbjct:   33 PYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKP---GGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDEDNKLVVLKSPNAVNPLVWGG--YYPLLTIDVWEHAYY 210          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRPO (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus porcinus GN=sodA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 2
Query:  236 EIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661
            E M LHH KHH  YV N N A+E   ++ + L ++  D S + + ++ A+  NGGGH+NH++FW+ L+P          S +  AID  FGS E+     +    +  GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:    5 ETMILHHDKHHATYVANANAALEKHPEIGENLEELLADVSAIPEDIRQALVNNGGGHLNHALFWELLSPEKT----EVTSDVASAIDEAFGSFESFKDAFTTAATSRFGSGWAWLVVNKEGK-LEVMSTANQDTPISEGKQ--PILGL 145          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            TL +LP+   ++   +S      HH KHHQ YV N N  ++        LF  L K          G +  N     NH  +W  L+P      +     L  A++  FGSLE   +        L GSGW W   + + +++ +++T+  Q P+  K    VPLL +DVWEHAYY
Sbjct:    3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTK--------SSGGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKEALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYY 163          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRCB (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus canis GN=sodA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  236 EIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 631
            E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P  +       + +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++
Sbjct:    5 ETMTLHHDKHHATYVANANAALEKHPEIGENLKELLADV-TKIPADIRQALINNGGGHLNHALFWELLSPEKQ----EITADVAQAIDEAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISE 137          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 60/171 (35.09%), Postives = 79/171 (46.20%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL----QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY    L P IS E +  H+ KHH  YV   N  ++        +++ T+ +L     GA+  N     NH+ +W ++ P    GGEP    +   I+  FGS  A     S   A   GSGW WL L  +    +V+T     PL  K     PLL  DVWEHAYY
Sbjct:    5 LPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKG-----TPLESCTIEELILGQTGAVFNNAAQIWNHTFYWNSMGP--NCGGEPT-GPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPL--KENLGRPLLCCDVWEHAYY 165          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRIN (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus iniae GN=sodA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  236 EIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 631
            E M LHH KHH  YV N N A+E+       L + L  V+ S    ++ A+  NGGGH+NH++FW+ L+P      +   S    AID  FGS +A  ++ +A      GSGW WL + T+   L + +TANQD  +++
Sbjct:    5 ETMTLHHDKHHATYVANANAALEKHPEIGENLEELLANVE-SIPADIRQALINNGGGHLNHALFWELLSPEKTEVTKEVAS----AIDQAFGSFDAFKEQFAAAATGRFGSGWAWL-VVTKEGSLEITSTANQDTPISE 137          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRAI (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus acidominimus GN=sodA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661
            I  E M LHH KHH  YV N N A+E+       L   L+ VD +    ++ A+  NGGGH+NH++FW+ L+P          + L   ID  FGS +A  +  +       GSGW +L ++ + K L V +TANQD  +T+   L P+L +
Sbjct:    2 IDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLSDVD-ALPADIRQALINNGGGHLNHALFWELLSPEK----TEISAELAADIDETFGSFDAFKEAFTTAATTRFGSGWAFLVVNPKGK-LEVISTANQDTPITQG--LKPILAL 145          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODF_CAMJJ4.431e-1732.75Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE4.431e-1732.75Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_HELPY5.787e-1731.76Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]
SODF_SOYBN7.559e-1732.79Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODM_STRPO1.684e-1637.16Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_HELPJ2.199e-1631.25Superoxide dismutase [Fe] OS=Helicobacter pylori J... [more]
SODM_STRCB2.872e-1636.69Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_BABBO8.357e-1635.09Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODM_STRIN1.425e-1537.41Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRAI4.148e-1536.18Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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