FC930327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17 Identity = 56/171 (32.75%), Postives = 81/171 (47.37%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH----EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 L LPYD +A +S E HH KHH YVTN N ++ + K S + G + N NH ++ + P G + ++L A++ FGSLE + + GSGW WL +T+ ++L T+N +T+ VPLL +DVWEHAYY Sbjct: 4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDT-EFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITE--DKVPLLVVDVWEHAYY 171
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17 Identity = 56/171 (32.75%), Postives = 81/171 (47.37%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVH----EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 L LPYD +A +S E HH KHH YVTN N ++ + K S + G + N NH ++ + P G + ++L A++ FGSLE + + GSGW WL +T+ ++L T+N +T+ VPLL +DVWEHAYY Sbjct: 4 LRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDT-EFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITE--DKVPLLVVDVWEHAYY 171
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17 Identity = 54/170 (31.76%), Postives = 82/170 (48.24%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL-FQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TL +LP+ ++ +S HH KHHQ YV N N ++ F+ + D T + G + N NH +W L+P + L A++ FGSLE + L GSGW W + + +++ +++T+ Q P+ K VPLL +DVWEHAYY Sbjct: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFDILT--KSSGGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYY 163
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17 Identity = 60/183 (32.79%), Postives = 84/183 (45.90%), Query Frame = 2 Query: 197 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV---EQLFQALNKVDTSTVVQLQGAIKFNGGGHV-NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGL----------------DTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 PY + LEP +S + ++ H KHH+ YV N K V E ++L ++ ++ + FN V NH FW+ + P GGG P L I+ FGS + + A A GSGW WL D + K +V+++ +PLV PLL IDVWEHAYY Sbjct: 33 PYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTELDGKSLEEIIVTSYNKGDILPAFNNAAQVWNHDFFWECMKP---GGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDEDNKLVVLKSPNAVNPLVWGG--YYPLLTIDVWEHAYY 210
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRPO (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus porcinus GN=sodA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16 Identity = 55/148 (37.16%), Postives = 83/148 (56.08%), Query Frame = 2 Query: 236 EIMQLHHQKHHQAYVTNYNKAVE---QLFQALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661 E M LHH KHH YV N N A+E ++ + L ++ D S + + ++ A+ NGGGH+NH++FW+ L+P S + AID FGS E+ + + GSGW WL ++ E K L V +TANQD +++ P+LG+ Sbjct: 5 ETMILHHDKHHATYVANANAALEKHPEIGENLEELLADVSAIPEDIRQALVNNGGGHLNHALFWELLSPEKT----EVTSDVASAIDEAFGSFESFKDAFTTAATSRFGSGWAWLVVNKEGK-LEVMSTANQDTPISEGKQ--PILGL 145
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_HELPJ (Superoxide dismutase [Fe] OS=Helicobacter pylori J99 GN=sodB PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16 Identity = 55/176 (31.25%), Postives = 80/176 (45.45%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL-VVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TL +LP+ ++ +S HH KHHQ YV N N ++ LF L K G + N NH +W L+P + L A++ FGSLE + L GSGW W + + +++ +++T+ Q P+ K VPLL +DVWEHAYY Sbjct: 3 TLRELPFAKDSMGDFLSPVAFDFHHGKHHQTYVNNLNNLIKGTDFEKSSLFAILTK--------SSGGVFNNAAQIYNHDFYWDCLSPKATALSD----ELKEALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYNLDTQKIEIIQTSNAQTPVTDKK---VPLLVVDVWEHAYY 163
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRCB (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus canis GN=sodA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16 Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 2 Query: 236 EIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 631 E M LHH KHH YV N N A+E+ L + L V T ++ A+ NGGGH+NH++FW+ L+P + + + AID FGS +A ++ +A GSGW WL ++ E +L + +TANQD +++ Sbjct: 5 ETMTLHHDKHHATYVANANAALEKHPEIGENLKELLADV-TKIPADIRQALINNGGGHLNHALFWELLSPEKQ----EITADVAQAIDEAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISE 137
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16 Identity = 60/171 (35.09%), Postives = 79/171 (46.20%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL----QGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP LPY L P IS E + H+ KHH YV N ++ +++ T+ +L GA+ N NH+ +W ++ P GGEP + I+ FGS A S A GSGW WL L + +V+T PL K PLL DVWEHAYY Sbjct: 5 LPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKG-----TPLESCTIEELILGQTGAVFNNAAQIWNHTFYWNSMGP--NCGGEPT-GPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPL--KENLGRPLLCCDVWEHAYY 165
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRIN (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus iniae GN=sodA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15 Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 2 Query: 236 EIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 631 E M LHH KHH YV N N A+E+ L + L V+ S ++ A+ NGGGH+NH++FW+ L+P + S AID FGS +A ++ +A GSGW WL + T+ L + +TANQD +++ Sbjct: 5 ETMTLHHDKHHATYVANANAALEKHPEIGENLEELLANVE-SIPADIRQALINNGGGHLNHALFWELLSPEKTEVTKEVAS----AIDQAFGSFDAFKEQFAAAATGRFGSGWAWL-VVTKEGSLEITSTANQDTPISE 137
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRAI (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus acidominimus GN=sodA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15 Identity = 55/152 (36.18%), Postives = 80/152 (52.63%), Query Frame = 2 Query: 227 ISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661 I E M LHH KHH YV N N A+E+ L L+ VD + ++ A+ NGGGH+NH++FW+ L+P + L ID FGS +A + + GSGW +L ++ + K L V +TANQD +T+ L P+L + Sbjct: 2 IDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLSDVD-ALPADIRQALINNGGGHLNHALFWELLSPEK----TEISAELAADIDETFGSFDAFKEAFTTAATTRFGSGWAFLVVNPKGK-LEVISTANQDTPITQG--LKPILAL 145 The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 223
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bpback to top |