FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15140 contig Ccv1_Contig15140:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRAY (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus alactolyticus GN=sodA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 661
            I  E M LHH KHH  Y+ N N A+E+  +    ++      T     ++ A+  NGGGH+NH++FW+ L P  +   EP    L  AI+  FGS E      +       GSGW WL ++ E K L V +T NQD  +++     P+LG+
Sbjct:    2 IDKETMILHHDKHHATYLANANAALEKHPEIGEDLEFLLSDVTRIPEDIRQALINNGGGHLNHALFWELLTPEKQ---EPTAEVLA-AIEDAFGSFEDFKTAFTQAATTRFGSGWAWLVVNQEGK-LEVMSTGNQDNPISQGKQ--PILGL 145          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_AQUAE (Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=sodB PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 56/160 (35.00%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            IS E ++ H + H++ YV  YN+  E+L    N  D S   Q       L+    FN  G V H +++  LAP   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY
Sbjct:   20 ISNEQIEPHFEAHYKGYVAKYNEIQEKLADQ-NFADRSKANQNYSEYRELKVEETFNYMGVVLHELYFGMLAP---GGKGEPSEALKKKIEEDLGGLDACTNELKA--AAIAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYY 171          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_AQUPY (Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN=sodB PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 55/160 (34.38%), Postives = 76/160 (47.50%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ-------LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            IS E ++ H + H++ YV  YN+  E+L    N  D S   Q       L+    FN  G V H +++  L P   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY
Sbjct:   20 ISNEQIEPHFEAHYKGYVAKYNEIQEKLADQ-NFADRSKANQNYSEYRELKVEETFNYMGVVLHELYFGMLTP---GGKGEPSEALKKKIEEDIGGLDACTNELKA--AAMAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYY 171          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM_STRAY2.058e-1435.10Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_AQUAE1.249e-1135.00Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=s... [more]
SODF_AQUPY3.633e-1134.38Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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