FC930327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34 Identity = 79/174 (45.40%), Postives = 104/174 (59.77%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLP L Y Y+ALEP I + M++HH KHHQ Y+ N N A+E + +AL + S L+G ++ NGGGH NHS+FWK L P GGGE P +L AI + G L+ + + GSGW WL + E K+LVVE+T NQD ++ T P+LG+DVWEHAYY Sbjct: 3 TLPPLDYAYTALEPHIDAQTMEIHHTKHHQTYINNVNAALEGTSFANEPVEALLQKLDSLPENLRGPVRNNGGGHANHSLFWKVLTP--NGGGE-PKGALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWLSVTPE-KKLVVESTGNQDSPLSTGNT--PILGLDVWEHAYY 170
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34 Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLP LPY Y ALEP I + M++HH KHHQ Y+ N N A+E A V+ S LQG ++ NGGGH NHS+FW ++P GGGE P + AID G E + + + GSGW WL + T K++VVE+TANQD + + T P+LG+DVWEHAYY Sbjct: 4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYY 171
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34 Identity = 79/174 (45.40%), Postives = 102/174 (58.62%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLP LPY Y ALEP I + M++HH KHHQ Y+ N N A+E A V+ S LQG ++ NGGGH NHS+FW ++P GGGE P + AID G E + + + GSGW WL + T K++VVE+TANQD + + T P+LG+DVWEHAYY Sbjct: 4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNGGGHANHSLFWTVMSP--NGGGE-PKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYY 171
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCSM (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=4) HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34 Identity = 75/168 (44.64%), Postives = 100/168 (59.52%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLPDL YDY ALEP ISG+I +LHH KHH YV N A+ +L +A D + + + + F+ GGH+NHSI+WKNL+P GG+ P L AID FGS + + +A LQGSGW LG D+ RL+ +Q V ++PLL +D+WEHA+Y Sbjct: 5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFY 167
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCS2 (Superoxide dismutase [Mn] OS=Mycobacterium smegmatis GN=sodA PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34 Identity = 75/168 (44.64%), Postives = 100/168 (59.52%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLPDL YDY ALEP ISG+I +LHH KHH YV N A+ +L +A D + + + + F+ GGH+NHSI+WKNL+P GG+ P L AID FGS + + +A LQGSGW LG D+ RL+ +Q V ++PLL +D+WEHA+Y Sbjct: 5 TLPDLDYDYGALEPHISGQINELHHSKHHATYVKGVNDAIAKLEEARANGDHAAIFLNEKNLAFHLGGHINHSIWWKNLSP---NGGDKPTGELAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGGRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFY 167
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCPA (Superoxide dismutase [Mn] OS=Mycobacterium paratuberculosis GN=sodA PE=1 SV=3) HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34 Identity = 76/168 (45.24%), Postives = 101/168 (60.12%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLPDL +DY+ALEP ISG+I ++HH KHH YV N A+ +L +A D + + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+Y Sbjct: 5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTVGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFY 167
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCAV (Superoxide dismutase [Mn] OS=Mycobacterium avium GN=sodA PE=3 SV=3) HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34 Identity = 76/168 (45.24%), Postives = 101/168 (60.12%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLPDL +DY+ALEP ISG+I ++HH KHH YV N A+ +L +A D + + + + F+ GGHVNHSI+WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+Y Sbjct: 5 TLPDLDWDYAALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSIWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFY 167
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 8.887e-34 Identity = 80/178 (44.94%), Postives = 106/178 (59.55%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 L LPYDY+ALEP I + M+LHH KHH YV N N ++V+ L Q LN+V + ++ I+ NGGGHVNH++FW+ +AP + GG P ++ AID FGS +A Q+ + GA GSGW WL D + K L + +TANQD + P P+LG DVWEHAYY Sbjct: 46 LDPLPYDYAALEPYIDAQTMRLHHDKHHATYVNNINETLKAYPDLQKQSVDSLIQNLNQVPEA----IRTKIRNNGGGHVNHTMFWQIMAP--KAGGTPT-GAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLVSDRQGK-LSITSTANQDNPLMSNPNAYPILGNDVWEHAYY 215
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_MYCLP (Superoxide dismutase [Mn] OS=Mycobacterium lepraemurium GN=sodA PE=3 SV=3) HSP 1 Score: 142.51 bits (358), Expect = 1.980e-33 Identity = 75/168 (44.64%), Postives = 100/168 (59.52%), Query Frame = 2 Query: 182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 TLPDL +DY ALEP ISG+I ++HH KHH YV N A+ +L +A D + + + + F+ GGHVNHS++WKNL+P GG+ P L AID FGS + + SA LQGSGW LG DT RL+ +Q V ++PLL +D+WEHA+Y Sbjct: 5 TLPDLDWDYEALEPHISGQINEIHHTKHHATYVKGVNDALAKLEEARANEDHAAIFLNEKNLAFHLGGHVNHSLWWKNLSP---DGGDKPTGELAAAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDTLGSRLLTFQLYDQQANVPLG--IIPLLQVDMWEHAFY 167
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5) HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33 Identity = 78/174 (44.83%), Postives = 101/174 (58.05%), Query Frame = 2 Query: 185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQG-------AIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685 LP+LPY Y ALEP I E M +HH KHH YVTN NKAVE NK V L A++ NGGGH NH +FW L+P GGGEP +L I++ FGS + ++ +A A GSGW WL ++ +L + +T NQD +++ T P+LG+DVWEHAYY Sbjct: 5 LPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHANHKLFWTLLSP--NGGGEPT-GALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNN--GKLEITSTPNQDSPLSEGKT--PILGLDVWEHAYY 171 The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 223
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bpback to top |