FC930327

Overview
NameFC930327
Unique NameFC930327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15140 contig Ccv1_Contig15140:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 76/175 (43.43%), Postives = 103/175 (58.86%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQ----ALNKV--DTSTVVQ-LQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            TLP+LPY  +ALEP      M+LHH KHHQ YV N N A+E+  +    +L ++  D S + + ++ A++ NGGGH+NHS FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYY
Sbjct:    4 TLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYY 175          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PARCL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Parastichopus californicus PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 72/148 (48.65%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 667
            I G+IM+LHH+KHH  Y  N N A E+L  A  + D   ++ LQ A+KFNGGG +NH IFW NL+P  +GGG  P   L  AI+  FGS ++    ++A   A+QGSGW WLG D +   L + T  NQDPL  +A T +VPL GIDV
Sbjct:    2 IIGDIMELHHKKHHATYTNNLNAAEEKLAAAHAEGDIGGMIALQPALKFNGGGFINHCIFWTNLSP--QGGG-VPEGDLADAINRDFGSFDSFKTTLTAATVAIQGSGWGWLGFDPKTHHLKIATCVNQDPL--QATTGMVPLFGIDV 144          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 75/179 (41.90%), Postives = 99/179 (55.31%), Query Frame = 2
Query:  182 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVV--------QLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT---LVPLLGIDVWEHAYY 685
            TLP+L Y Y+ALEP    + M++HH KHHQAYV N N A+E L   L ++    ++        + +GA++ N GGH NHS+FWK+L       G     +L  AI+  FGS++A   +     A   GSGW WL L  E K  VV T    +PL+ K        PLLG+DVWEHAYY
Sbjct:    4 TLPELGYAYNALEPHFDAQTMEIHHSKHHQAYVNNANAALEGLPAELVEMYPGHLISNLDKIPAEKRGALRNNAGGHTNHSLFWKSLKK-----GTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYY 177          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_AGABI (Superoxide dismutase [Mn], mitochondrial OS=Agaricus bisporus GN=sod PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 73/169 (43.20%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKF--NGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LPDLPY Y ALEP IS +IM+LHH+K              Q  +   +  T+ V     ++ F     GH+NHS+FW+NLAP    GG+     L  AID  FG L+ L ++ +   A +QGSGW WLG++   KRL + TT NQDPL+     LVP++G+D+WEHA+Y
Sbjct:    5 LPDLPYAYDALEPYISRQIMELHHKKTSSDLCE-----CAQHCRGCLRHSTAVVGGFDLSLFFILTTLGHINHSLFWQNLAPAAGAGGQLKPGPLKDAIDQTFGGLDNLKKEFNTTTAGIQGSGWGWLGVNPSNKRLEISTTPNQDPLL----NLVPIIGVDIWEHAFY 164          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.564e-30
Identity = 72/174 (41.38%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE-------QLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY++ ALEP I  E M++HH KHH  YVT  N A+E        + + +  +D S    +Q A++ NGGGH+NHS+FW+ L P  E  G     ++   I   +GSL+    + + + A   GSGW WL +D + K L + +T NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPNLPYEFDALEPYIDKETMEIHHDKHHNTYVTKLNAAIEGTDLENKSIEEIVANLD-SVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKG-----TVIDKIKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVVDKDGK-LEIVSTPNQDNPITEGKT--PILGLDVWEHAYY 169          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 73/177 (41.24%), Postives = 102/177 (57.63%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN----------KAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP LPY + ALEP I  E M++HH KHH  YVT  N          K++E++   L+ V +     +Q A++ NGGGH+NHS+FW+ L P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPKLPYAFDALEPHIDKETMEIHHDKHHNTYVTKLNAVVEGTDLEAKSIEEIVANLDSVPS----DIQTAVRNNGGGHLNHSLFWELLTPNSEEKGEVVEK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNN--GQLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_PALVU (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Palinurus vulgaris PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.786e-30
Identity = 71/147 (48.30%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  227 ISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 667
            IS  IMQ+HH KHHQAY+ N     E+L QA    D + +  L  AIKFNGGGH+NH+IFW N+AP    GGEP    +  AI   FGS +A   K S     ++GSGW WLG   +  +L V T  NQDPL      L+PLLG+DV
Sbjct:    2 ISEMIMQIHHTKHHQAYINNLKACTEKLKQAEQANDVAAMNALLPAIKFNGGGHINHTIFWTNMAP--SAGGEPA-GPVADAITKEFGSFQAFKDKFSTASVGVKGSGWGWLGYCPKNDKLAVATCQNQDPL-QLTHGLIPLLGLDV 144          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.017e-29
Identity = 72/173 (41.62%), Postives = 100/173 (57.80%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY + ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L P  E  G     ++   I   +GSL+A  ++ + + AA  GSGW WL ++     L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPNLPYGFDALEPHIDQQTMEIHHGKHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKG-----TVVDKIKEQWGSLDAFKEEFADKAAARFGSGWAWLVVNN--GNLEIVTTPNQDNPITEGKT--PILGLDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.017e-29
Identity = 72/173 (41.62%), Postives = 100/173 (57.80%), Query Frame = 2
Query:  185 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            LP+LPY + ALEP I  + M++HH KHH  YVT  N AVE        ++       S    +Q A++ NGGGH+NHS+FW+ L P  E  G     ++   I   +GSL+A  ++ + + AA  GSGW WL ++     L + TT NQD  +T+  T  P+LG+DVWEHAYY
Sbjct:    5 LPNLPYGFDALEPHIDKQTMEIHHDKHHNTYVTKLNAAVEGTDLESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKG-----TVVDKIKEQWGSLDAFKEEFADKAAARFGSGWAWLVVNN--GNLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYY 168          
BLAST of FC930327 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.864e-29
Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = 2
Query:  179 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ-------LFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYY 685
            + LP+LPY Y ALEP    E M LHH KHH  YV N N A+E+       L + L  V T     ++ A+  NGGGH+NH++FW+ L+P      +   S +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYY
Sbjct:    3 IILPELPYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGENLEELLADV-TKIPEDIRQALINNGGGHLNHALFWELLSPEK----QDVTSDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYY 170          
The following BLAST results are available for this feature:
BLAST of FC930327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SODM_LACLA1.201e-3043.43Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_PARCL1.569e-3048.65Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_HAEIN1.569e-3041.90Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_AGABI1.569e-3043.20Superoxide dismutase [Mn], mitochondrial OS=Agaric... [more]
SODM_STACA4.564e-3041.38Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM_STAEP7.786e-3041.24Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_PALVU7.786e-3048.30Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_STAXY1.017e-2941.62Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODM_STAS11.017e-2941.62Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_STRP33.864e-2940.91Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionC34006C06EF PostHarvC1 Citrus clementina cDNA clone C34006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930327 ID=FC930327; Name=FC930327; organism=Citrus clementina; type=EST; length=686bp
AGGGAAATCAACACTTCGAGCTTTCTCGTCTTGGACTTAATTTAGCTCGT
CTCGGTTGAATTTCGAACGATCAAGAAACGTCACCGTTTCATTCGCGATG
GCTCTCCGTTCGCTTGCCATCAGAAAAGCTATAGGCTTGGGTAAATCCGT
AGGATTAGGGCTGCGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGT
ACGATTACAGCGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTT
CATCACCAGAAGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGT
CGAGCAGCTTTTTCAAGCTTTGAACAAAGTCGATACGTCCACCGTCGTCC
AGTTGCAGGGCGCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCA
ATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACC
ACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAG
CATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGA
TGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTTGAAAC
TACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGTTCCTT
TGCTTGGTATAGATGTTTGGGAGCATGCATACTACC
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