FC930328

Overview
NameFC930328
Unique NameFC930328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930328_ssr121 microsatellite FC930328_ssr121:121..130. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15141 contig Ccv1_Contig15141:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT1_MAIZE (Caffeoyl-CoA O-methyltransferase 1 OS=Zea mays GN=CCOAOMT1 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.929e-54
Identity = 100/134 (74.63%), Postives = 119/134 (88.81%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QYIL+TSVYPREP+ +KE+RE+T KHPW+ M T+ DE QFL+ML+KLI AK TMEIGV+TGYSLLATALA+P+DG ILA+DI +E+YE GLP I+KAGVAHKIDFREGPALP+LD LI +EK HG+FDFVFVDA
Sbjct:   42 QYILDTSVYPREPESMKELREVTAKHPWNLMTTSADEGQFLNMLIKLIGAKKTMEIGVYTGYSLLATALALPEDGTILAMDINRENYELGLPCIEKAGVAHKIDFREGPALPVLDDLIAEEKNHGSFDFVFVDA 175          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT_PINTA (Caffeoyl-CoA O-methyltransferase OS=Pinus taeda GN=CCOAOMT PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.519e-54
Identity = 99/133 (74.44%), Postives = 120/133 (90.23%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVD 663
            QYILETSVYPREP+ +KE+  +T KHPW+ M T+ DE QFL +LLKLINAKNTMEIGV+TGYSLL+TALA+PDDGKILA+DI +E+Y+ GLPII+KAGVAHKIDFREGPALP+LD+L+++E  HG+FDFVFVD
Sbjct:   43 QYILETSVYPREPEPMKELPRVTAKHPWNLMTTSADEGQFLGLLLKLINAKNTMEIGVYTGYSLLSTALALPDDGKILAMDINRENYDIGLPIIEKAGVAHKIDFREGPALPVLDELLKNEDMHGSFDFVFVD 175          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT2_MAIZE (Caffeoyl-CoA O-methyltransferase 2 OS=Zea mays GN=CCOAOMT2 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.204e-53
Identity = 96/134 (71.64%), Postives = 116/134 (86.57%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QYIL+TSVYPREP+ +KE+RE+T KHPW+ M T+ DE QFL+ML+KLI AK TMEIGV+TGYSLLATALA+P+DG ILA+DI +E+YE GLP I KAGV HKIDFREGPALP+LD L+ D++ HG+FDF FVDA
Sbjct:   48 QYILDTSVYPREPESMKELREITAKHPWNLMTTSADEGQFLNMLIKLIGAKKTMEIGVYTGYSLLATALALPEDGTILAMDINRENYELGLPCINKAGVGHKIDFREGPALPVLDDLVADKEQHGSFDFAFVDA 181          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT3_ARATH (Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.875e-44
Identity = 80/134 (59.70%), Postives = 106/134 (79.10%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            +YILETSVYPREP+ L+E+R +T  HP + M TAPD  Q + MLL L+NA+ T+E+GVFTGYSLL TAL +P+DGK++A+D+ ++ YE GLP+I+KAGV HKIDF+E  ALP LD+L+ ++   G FDF FVDA
Sbjct:   17 KYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDA 150          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT_STELP (Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.637e-38
Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QYIL+TSV+PRE + LKE+R+ T+ HP S M T+P   Q LS +LK +  K T+E+GVFTGYSLLATAL+IPDDGKI A+DI +E Y  GL +I+KAGV  KI F    A+ LLD L+ D +Y G++DF FVDA
Sbjct:   26 QYILDTSVFPRESEHLKELRKATESHPMSFMGTSPLAGQLLSFMLKTVKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNVGLALIKKAGVESKISFIVSDAMTLLDDLLADGRYQGSYDFAFVDA 159          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT1_ARATH (Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.697e-34
Identity = 80/136 (58.82%), Postives = 98/136 (72.06%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELT-DKHPWSAMMTAP-DEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QYI+ETS YPRE + LKE+R+ T  K+   + M  P DE  FLSML+K++NAKNT+EIGVFTGYSLL TALA+P+DG+I A+DI KE YE GL  I+KAGV HKI+F     L  LDQL+ D+     FDF F DA
Sbjct:   18 QYIMETSAYPREHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIHSDGLKALDQLVNDK---CEFDFAFADA 150          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT_POPKI (Caffeoyl-CoA O-methyltransferase OS=Populus kitakamiensis PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.181e-33
Identity = 76/136 (55.88%), Postives = 98/136 (72.06%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKH--PWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QYI ETS YP E + LKE+RE T K     S M    DE +FLSMLLKL+NAK T+E+GVFTGYSLL+TALA+P+DG++ A+D  +  YE GLP IQKAGV  KI+F +  A P+L++++ ++K    FDF FVDA
Sbjct:   18 QYIYETSAYPGEHEQLKELREATTKKYGSLSGMSVPVDEGRFLSMLLKLMNAKRTLEVGVFTGYSLLSTALALPEDGQVTAIDKDRGAYEIGLPFIQKAGVEDKINFIQSEAPPILNEMLCNDK-QPEFDFAFVDA 152          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CAMT2_ARATH (Probable caffeoyl-CoA O-methyltransferase At1g67990 OS=Arabidopsis thaliana GN=At1g67990 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 75/136 (55.15%), Postives = 96/136 (70.59%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKH--PWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QYI+ET+ YPRE + LKE+RE T +     S M    DE+ FLSML+K+INAKNT+EIGVFTGYSL   ALA+P+DG+I A+DI +  Y  GL  ++KAGV HKI+F +  A+  LDQL+  EK    +DF FVDA
Sbjct:   18 QYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFLSMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDHKINFIQSDAVRGLDQLLNGEKQE--YDFAFVDA 151          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CMTD1_HUMAN (Catechol-O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.301e-20
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QY+L  S+  RE   L+ +R LT + P    M   ++AQ L+ L +LI AK  +++G FTGYS LA ALA+P DG+++  ++  +  E G P+ ++A   HKID R  PAL  LD+L+   +  GTFD   VDA
Sbjct:   56 QYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE-AGTFDVAVVDA 186          
BLAST of FC930328 vs. ExPASy Swiss-Prot
Match: CMTD1_MOUSE (Catechol-O-methyltransferase domain-containing protein 1 OS=Mus musculus GN=Comtd1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.861e-19
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 1
Query:  265 QYILETSVYPREPQCLKEIRELTDKHPWSAMMTAPDEAQFLSMLLKLINAKNTMEIGVFTGYSLLATALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDA 666
            QY+L  S+  RE   L+ +R LT + P    M   ++AQ L+ L +LI AK  +++G FTGYS LA ALA+P+ G+++  ++  E  + G P+ ++A V  KID R  PAL  LD+L+   +  GTFD   VDA
Sbjct:   56 QYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIKAKKALDLGTFTGYSALALALALPEAGRVVTCEVDAEPPKLGRPMWKQAEVEQKIDLRLQPALQTLDELLAAGE-AGTFDIAVVDA 186          
The following BLAST results are available for this feature:
BLAST of FC930328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CAMT1_MAIZE1.929e-5474.63Caffeoyl-CoA O-methyltransferase 1 OS=Zea mays GN=... [more]
CAMT_PINTA2.519e-5474.44Caffeoyl-CoA O-methyltransferase OS=Pinus taeda GN... [more]
CAMT2_MAIZE6.204e-5371.64Caffeoyl-CoA O-methyltransferase 2 OS=Zea mays GN=... [more]
CAMT3_ARATH6.875e-4459.70Probable caffeoyl-CoA O-methyltransferase At4g2622... [more]
CAMT_STELP5.637e-3858.21Caffeoyl-CoA O-methyltransferase OS=Stellaria long... [more]
CAMT1_ARATH1.697e-3458.82Putative caffeoyl-CoA O-methyltransferase At1g6798... [more]
CAMT_POPKI4.181e-3355.88Caffeoyl-CoA O-methyltransferase OS=Populus kitaka... [more]
CAMT2_ARATH4.622e-3255.15Probable caffeoyl-CoA O-methyltransferase At1g6799... [more]
CMTD1_HUMAN5.301e-2041.79Catechol-O-methyltransferase domain-containing pro... [more]
CMTD1_MOUSE5.861e-1941.04Catechol-O-methyltransferase domain-containing pro... [more]

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Properties
Property NameValue
Genbank descriptionC34006C07EF PostHarvC1 Citrus clementina cDNA clone C34006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930328 ID=FC930328; Name=FC930328; organism=Citrus clementina; type=EST; length=666bp
GATGGTATTCTGTAAGTAATGCCTGCGAATCGGGAAGGTCAGGAGGAAAA
CAAGGATCGTTACTACAAAACTCTACATGGGAACAAGACCCTTTTACAGA
GTGAAAAACTTTATGAGGTGTATATATATACATACAAATTAAAACTACAC
ACTCTTTTTAATTTTCTGTTTCTTTAATTTAACTAAAATGTAGAATGGAA
TGTCTCAATTATGCCGGCTATTATAATTTCTCTATCTTGATTTCTTCTTA
TTAATTATATCTTGCAGTATATACTTGAAACCAGTGTATATCCAAGAGAA
CCACAATGCTTGAAGGAGATCCGCGAGTTGACGGACAAGCATCCATGGAG
CGCCATGATGACTGCACCTGATGAAGCACAATTTTTGAGCATGCTACTCA
AGCTTATCAATGCCAAGAATACCATGGAAATTGGCGTTTTCACTGGTTAC
TCTCTCCTAGCCACTGCCCTCGCCATTCCCGACGATGGCAAGATACTGGC
CCTGGACATCACCAAGGAACACTACGAGAAGGGTCTCCCTATAATTCAAA
AAGCTGGTGTTGCCCACAAGATTGATTTCAGAGAAGGCCCTGCTCTTCCT
CTTCTTGATCAATTGATCCAAGACGAAAAATATCATGGGACATTCGACTT
CGTCTTTGTTGATGCT
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