FC930331

Overview
NameFC930331
Unique NameFC930331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig895 contig Ccv1_Contig895:282..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 47/163 (28.83%), Postives = 74/163 (45.40%), Query Frame = 2
Query:  200 GKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN-----SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            G FF E+ L++   + +    + M    FLPR      PFSS ++  +   F     S   S++K+ L ECE P +KGE K C  S E M+DF  S LG      + T    ++     Q   +   + +   +  Q ++CH   +PY ++ CH     R Y+
Sbjct:  107 GLFFLETNLQSSKSIKL-HFANMMAGTKFLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTRDIKAASTFLVGKDGDTPAQEYTVTGARRM--AETGQLIACHPESYPYAVFMCHLTEATRAYK 266          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 44/158 (27.85%), Postives = 70/158 (44.30%), Query Frame = 2
Query:  206 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN---SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 670
            FF E  ++ G  +P            FLPR +    PF+++ +  +   F  + +S+  + ++  L  CE P   GE+K C  S E +++ A  VLG         T        Q   + SV+ + GG V   V+CH   +PY +Y CH+    R Y
Sbjct:  169 FFHEEAVRVGKRLPFRFPPATPAALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTSTLPRAGAPLQTYTVRSVRPVEGGPV--FVACHDEAYPYTVYRCHTTGPSRAY 324          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 42/135 (31.11%), Postives = 58/135 (42.96%), Query Frame = 2
Query:  281 SFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN-----SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 670
            +FLPR      PF S   +   + F     S    ++K  + ECE     GE K C  S E M+DF+ S LG        T    +N    K  I    VK ++  K   SV CH+  +P+ ++YCH      VY
Sbjct:  203 AFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAPMQKYKIAAAGVKKLSDDK---SVVCHKQKYPFAVFYCHKAMMTTVY 334          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 43/158 (27.22%), Postives = 69/158 (43.67%), Query Frame = 2
Query:  206 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGN---SVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 670
            FF E  ++ G  +P            FLPR +    PF+++ +  +   F  + +S+    ++  L  CE P   GE+K C  S E +++ A  VLG         T        Q   + +V+ + GG V   V+CH   +PY +Y CH+    R Y
Sbjct:  142 FFHEEAVRVGRRLPFHFPPATPAALGFLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTSTLPRAGAPLQTYTVVAVQPVEGGPV--FVACHDEAYPYTVYRCHTTGPSRAY 297          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURPA_ORYSJ (BURP domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=BURP10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 51/162 (31.48%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  209 FRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERP-PSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQ------GSKQNIM-IGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 670
            F E  LK G+++  P I     +  FL R I    P S+ N   +  +F +  +  M   I+ AL  CE   P KGE + C  S E +++FA SVLG       + +V       G+   ++ + +V G+ G  VT    CH   FP+ ++YCH++   RVY
Sbjct:  113 FLEDALKPGSIIT-PYITGIATRAPFLRRDIADSIPVSTKNFADILAMF-SPISLVMADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYKVVAVRTVAGLRGDTVT----CHTMRFPFAVFYCHAINPTRVY 268          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 36/155 (23.23%), Postives = 69/155 (44.52%), Query Frame = 2
Query:  206 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 670
            FF E  ++ G  +P            FLPR +    PF+++ +  +  +F  + +++  + +++ L  CE P   GE+K C  S E +++ A + LG          +      +   +V+ +   +    V+CH   +PY +Y CH+    R Y
Sbjct:  190 FFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAVLPVEGAGFVACHDQAYPYTVYRCHTTGPARAY 344          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 38/128 (29.69%), Postives = 58/128 (45.31%), Query Frame = 2
Query:  284 FLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLG-------NSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCH 646
            FLPR      PFSS  +  + + F     S   + +   L +CE P +KGE K C  S E ++DF TS  G       ++V L          Q+  +  V+ + G    Q ++CH   +PY ++ CH
Sbjct:  392 FLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGASDVDAASTVVLSKAVESSSLAQDYTVSGVRRMAG--TGQLIACHPESYPYAVFMCH 517          
The following BLAST results are available for this feature:
BLAST of FC930331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
BURP5_ORYSJ1.288e-1328.83BURP domain-containing protein 5 OS=Oryza sativa s... [more]
RAF1A_WHEAT3.172e-1227.85Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
RD22_ARATH1.574e-1131.11Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
RAF1B_WHEAT2.056e-1127.22Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
BURPA_ORYSJ3.507e-1131.48BURP domain-containing protein 10 OS=Oryza sativa ... [more]
BURPD_ORYSJ5.982e-1123.23BURP domain-containing protein 13 OS=Oryza sativa ... [more]
BURPH_ORYSJ7.813e-1129.69BURP domain-containing protein 17 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC34006C11EF PostHarvC1 Citrus clementina cDNA clone C34006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930331 ID=FC930331; Name=FC930331; organism=Citrus clementina; type=EST; length=674bp
CAACAGTGTCTCGCATAAATTCTCTGGATACGGGGAGAATGCGGACGGAC
AAAAGATCGGGTTCAAAGTTTATGGACCAGATCGCAGTTTTAAAGACTAT
GCCAAAACCGGTGTAACTTTTGCCAGCTACAGTAAAAGCGGCTCTGGCTC
AGCCAATGGCAGTTCGGTGAATAAAAATAATAATAAATGGGTGGAGCCGG
GCAAGTTCTTCCGCGAGTCTATGCTGAAGACGGGAACTGTGATGCCAATG
CCTGACATTCGAGATAAAATGCCTCAAAGGTCGTTTCTGCCCCGGGCCAT
CGTTTCCAAGTTCCCATTTTCGAGTTCCAATGTAAACGTACTCAAGGAAA
TATTCCATGCAAGTGAAAATTCTAGCATGGAGAGTATAATCAAGGATGCG
TTGAGCGAGTGTGAGCGGCCACCAAGCAAGGGCGAGACCAAACGGTGCAT
TGGCTCAGCCGAGGATATGATTGACTTCGCCACCTCAGTACTGGGAAACA
GCGTGACTCTTCGTACAACTCAGAACGTGCAAGGGTCAAAACAGAACATT
ATGATTGGTTCAGTGAAGGGAATCAACGGTGGCAAAGTCACCCAATCTGT
CTCTTGTCACCAAAGCTTGTTTCCATATTTGCTATACTACTGCCACTCGG
TTCCAAAAGTGAGGGTGTATGAAG
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