FC930340

Overview
NameFC930340
Unique NameFC930340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 68/142 (47.89%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   12 LTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKMKETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMK 437
            LTSL DYV RMKEGQ  IYY+ GES+KAV +SP LE LK++G+EVLYM D +DE+A   L+EF+GK LVSA +  LKL  ++++KK +E   E  + L   +KDVL                P CLV  E G  A +ER+++
Sbjct:  418 LTSLADYVGRMKEGQEAIYYVYGESRKAVADSPHLEALKQRGFEVLYMTDPVDEWAAQGLREFQGKPLVSALQADLKLQSTDEQKKEQEQHAEGLKTLTSKMKDVLQESVREVRVSDRLTDSPVCLVVPEGGSPAYLERLLQ 559          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_GEOSL (Chaperone protein htpG OS=Geobacter sulfurreducens GN=htpG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.637e-28
Identity = 63/145 (43.45%), Postives = 86/145 (59.31%), Query Frame = 3
Query:   18 SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKMKETLKE----KFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            SLK+YV RM EGQ +IY+ITG S+ A+E SP LE  +KKGYEVL++ D +DE+ V  L E+ GKKL  A   G  +  +E+EKK +E  +E    ++  L   +K+ L                 CCLV  E+G  ANMERI++A
Sbjct:  427 SLKEYVERMPEGQEEIYFITGTSRAALEQSPHLEIFRKKGYEVLFLTDPVDEWVVQGLPEYGGKKL-KAVDRGDVIPATEEEKKEQEAKREEAAKQYGDLLSFVKEKLAERVKEVRLSNRLTDSACCLVADEHGLNANMERILRA 570          

HSP 2 Score: 33.113 bits (74), Expect = 1.637e-28
Identity = 16/63 (25.40%), Postives = 29/63 (46.03%), Query Frame = 1
Query:  481 SKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRML 669
            SK+ +E+NP++PIM+ +      DK +  + D           T G  + DP  F   +  ++
Sbjct:  578 SKRILELNPDHPIMQVMATLFGKDKTNPRLADYCDLLYDQALLTEGSPIADPLRFTRLVAELM 640          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_SHELP (Chaperone protein htpG OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-28
Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   18 SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            SL DYV RMKEGQ+ IYYI  +S +A  NSP LE L+KKG EVL M + IDE+ +  L EF+GK+L S T+  L+L E ED  EK+ +E L+ + EGL K +K+VLG               P C+V G    ++ M ++M+A
Sbjct:  426 SLSDYVERMKEGQSKIYYIVADSHEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLSEFDGKQLHSVTRGDLELGELEDAAEKEAQEKLETESEGLVKRVKEVLGDKVAEVKVTSRLTDTPACVVAGAGEMSSQMIKLMQA 568          

HSP 2 Score: 29.261 bits (64), Expect = 2.131e-28
Identity = 17/63 (26.98%), Postives = 31/63 (49.21%), Query Frame = 1
Query:  481 SKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRML 669
            SK   E+NPE+P++    KR D +++++               +   SL DP+ F   +++ML
Sbjct:  576 SKPVFELNPEHPLV----KRLDTEQDEEVFGQWAELLLQQAQLSEKGSLADPSAFIKLMNKML 634          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 7.971e-28
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = 3
Query:   18 SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDE--KKMKETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            SL DY+ RMKEGQ+ IYYIT ++  A +NSP LE  KKKG EVL + D +DE+  G L EF+GK L S  K  L L   EDE  K+ ++ ++E  + + + ++  LG               P CLV GE+  +A++ER++KA
Sbjct:  418 SLADYIGRMKEGQDKIYYITADTLAAAKNSPHLEVFKKKGVEVLLLTDRVDEWVTGSLFEFDGKALQSVAKGALDLGALEDEADKEAQKQVEEASKPVVEKVQKALGDKVKEVRATARLVESPACLVAGEHDMSAHLERMLKA 560          

HSP 2 Score: 33.113 bits (74), Expect = 7.971e-28
Identity = 18/63 (28.57%), Postives = 32/63 (50.79%), Query Frame = 1
Query:  481 SKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRML 669
            SK T+EINPE+ +++ L + +D    +    D             G  L+DP +F  RI++++
Sbjct:  568 SKPTLEINPEHVLVKRLAEESD----EARAGDLAAVLYDQALLAEGGKLEDPASFVKRINKLM 626          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_AZOSE (Chaperone protein htpG OS=Azoarcus sp. (strain EbN1) GN=htpG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 67/147 (45.58%), Postives = 89/147 (60.54%), Query Frame = 3
Query:    6 DELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKMKETLK--EKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            DE+ SL DY+ RMKEGQ+ IYY+T ES  A +NSP LE  +KKG EVL + D +DE+ +G L EF+GK LVS  K GL L + EDE + KET K  ++++ L + +K  LG               P CLV  E+    N+ RI+KA
Sbjct:  428 DEVVSLADYLARMKEGQDKIYYVTAESFNAAKNSPHLEIFRKKGIEVLLLTDRVDEWVIGNLPEFDGKALVSVAKGGLDLGKLEDEAEKKETEKAADEYKELLEKMKASLGERVKEVRVTHRLTDSPACLVADEHDVGMNLARILKA 574          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_SHEHH (Chaperone protein htpG OS=Shewanella halifaxensis (strain HAW-EB4) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.037e-27
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   18 SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            SL DYV RMKEGQ+ IY+I  +S +A  NSP LE L+KKG EVL M + IDE+ +  L EF+GKKL S T+  L+L E ED  EK+ +E L+ + EGL K +KD LG               P C+V GE   +  M ++M+A
Sbjct:  426 SLADYVERMKEGQSKIYFIVADSYEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEFDGKKLHSVTRGDLELGELEDASEKEAQEKLETESEGLVKRVKDSLGDKVSAVKVTTRLTDTPACVVAGEGEMSTQMIKLMQA 568          

HSP 2 Score: 26.9498 bits (58), Expect = 1.037e-27
Identity = 17/63 (26.98%), Postives = 28/63 (44.44%), Query Frame = 1
Query:  481 SKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRML 669
            SK T E+NPE+P++  L    D    ++               +   SL DP+ F   +++ML
Sbjct:  576 SKPTFELNPEHPLVARLNDEQD----EQRFAQWSELLLQQALLSEKGSLADPSAFIKLMNQML 634          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPA (Chaperone protein htpG OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.289e-27
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   18 SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESE--DEKKMKETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            SL DY+ RM+EGQ+ IYYI  +S +A  NSP LE L+KKG EVL M + IDE+ +  L EF+GKKL S T+  L+L E E  DEK+ +E L+ + EGL K +KD LG               P C+V GE   +  M ++M+A
Sbjct:  425 SLADYIERMQEGQSKIYYIVADSHEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEFDGKKLHSVTRGDLELGELEDDDEKEAQEKLQTESEGLVKRVKDSLGDKVSEVKVTTRLTDTPACVVAGEGEMSTQMIKLMQA 567          

HSP 2 Score: 25.7942 bits (55), Expect = 2.289e-27
Identity = 16/62 (25.81%), Postives = 27/62 (43.55%), Query Frame = 1
Query:  484 KKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRML 669
            K T E+NPE+P++  L    D    ++               +   SL DP+ F   +++ML
Sbjct:  576 KPTFELNPEHPLVARLNDEQD----EQQFAQWSELLLQQALLSEKGSLADPSAFIKLMNQML 633          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_GEOMG (Chaperone protein htpG OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=htpG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.978e-27
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 3
Query:    9 ELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKMKETLKE----KFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            + TSLK+YV RM  GQ +IY+ITG S+ A+E SP LE  +KK YEVL++ D +DE+ V  + E++GKKL  A   G  +  +E+EKK +E  +E    ++  L   +K+ L                 CCLV  E+G  ANMERI++A
Sbjct:  424 KFTSLKEYVERMPAGQEEIYFITGTSRTALEQSPHLEIFRKKEYEVLFLTDPVDEWVVQGVTEYDGKKL-KAVDRGDVIPATEEEKKEQEAKREEAFKQYGDLLSFVKEKLDARVKEVRLSSRLTDSACCLVADEHGLNANMERILRA 570          

HSP 2 Score: 31.9574 bits (71), Expect = 2.978e-27
Identity = 15/63 (23.81%), Postives = 29/63 (46.03%), Query Frame = 1
Query:  481 SKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRML 669
            SK+ +E+NP++P+M+ +      DK +  + D           T G  + DP  F   +  ++
Sbjct:  578 SKRILELNPDHPLMQVMANLFARDKANPRLGDYCDLLYDQALLTEGSPISDPLRFTRLVAELM 640          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_PSEAE (Chaperone protein htpG OS=Pseudomonas aeruginosa GN=htpG PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.572e-27
Identity = 59/148 (39.86%), Postives = 84/148 (56.76%), Query Frame = 3
Query:    3 GDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLD--ESEDEKKMKETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            G++  +L DY+ RMKEGQ+ IYY+TGES   V+NSP LE  +KKG EVL + D IDE+ +  L EF+GK+ V   +  L L   +SE++KK +E + +  EGL + +K VL                P  L  GE      M +I++A
Sbjct:  416 GEQSVALADYIGRMKEGQDKIYYLTGESYSQVKNSPHLEVFRKKGIEVLLLTDRIDEWLMSYLPEFDGKQFVDVARGDLDLGSLDSEEDKKAQEEVAKSKEGLIERLKKVLDEQVSEVRVSHRLTDSPAILAIGEQDLGLQMRQILEA 563          

HSP 2 Score: 35.039 bits (79), Expect = 6.572e-27
Identity = 20/78 (25.64%), Postives = 39/78 (50.00%), Query Frame = 1
Query:  436 RLRPLRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXXTSGFSLDDPNTFGNRIHRML 669
            ++R + + S      SK   EINP++P++E+L    DA+ ++    +            +G SL DP  +  R++++L
Sbjct:  556 QMRQILEASGQKVPDSKPIFEINPQHPLIEKL----DAEPDEDRFGELSHILFDQAALAAGDSLKDPGAYVRRLNKLL 629          
BLAST of FC930340 vs. ExPASy Swiss-Prot
Match: HTPG_SHESH (Chaperone protein htpG OS=Shewanella sediminis (strain HAW-EB3) GN=htpG PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.113e-26
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   18 SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESED--EKKMKETLKEKFEGLCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA 440
            SL DYV+RM+EGQ+ IYYI  +S +A  NSP LE L+KKG EV+ M + IDE+ +  L +F+GK+L S T+  L+L + ED  EK+ +E L+ + EGL K IKD LG               P C+V GE   +  M ++M+A
Sbjct:  425 SLADYVSRMQEGQSKIYYIVADSHEAAANSPHLELLRKKGIEVVLMSERIDEWLINHLTDFDGKQLHSVTRGDLELGDLEDAGEKEAQEKLETESEGLVKRIKDSLGEKVSAVKVTTRLTDTPACVVAGEGEMSTQMIKLMEA 567          

HSP 2 Score: 26.9498 bits (58), Expect = 1.113e-26
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 1
Query:  481 SKKTMEINPENPIMEELRKRAD 546
            SK T EINPE+P++  L    D
Sbjct:  575 SKPTFEINPEHPLVARLNDEQD 596          
The following BLAST results are available for this feature:
BLAST of FC930340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
HTPG_MYXXD1.564e-2847.89Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_GEOSL1.637e-2843.45Chaperone protein htpG OS=Geobacter sulfurreducens... [more]
HTPG_SHELP2.131e-2845.45Chaperone protein htpG OS=Shewanella loihica (stra... [more]
HTPG_CHRVO7.971e-2841.96Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_AZOSE1.014e-2745.58Chaperone protein htpG OS=Azoarcus sp. (strain EbN... [more]
HTPG_SHEHH1.037e-2746.15Chaperone protein htpG OS=Shewanella halifaxensis ... [more]
HTPG_SHEPA2.289e-2745.45Chaperone protein htpG OS=Shewanella pealeana (str... [more]
HTPG_GEOMG2.978e-2741.22Chaperone protein htpG OS=Geobacter metallireducen... [more]
HTPG_PSEAE6.572e-2739.86Chaperone protein htpG OS=Pseudomonas aeruginosa G... [more]
HTPG_SHESH1.113e-2644.06Chaperone protein htpG OS=Shewanella sediminis (st... [more]

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Properties
Property NameValue
Genbank descriptionC34006E01EF PostHarvC1 Citrus clementina cDNA clone C34006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930340 ID=FC930340; Name=FC930340; organism=Citrus clementina; type=EST; length=714bp
GTGGTGATGAGTTGACTAGCTTGAAGGACTATGTGACCAGAATGAAGGAA
GGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTGTTGA
GAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTGCTCT
ACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGAGTTT
GAGGGAAAGAAGCTTGTCTCAGCGACCAAAGAAGGTCTCAAGCTTGATGA
GAGTGAAGATGAGAAGAAGATGAAGGAAACCTTGAAGGAGAAATTTGAGG
GTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAAGGTT
GTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTGGTGA
GTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCCTTTG
AGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGAGAT
CAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATGCGG
ACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTGCTCTTTGAGACT
GCTCTCCTCACTTCTGGTTTCAGCCTTGATGACCCTAACACTTTCGGCAA
CAGAATCCACAGGATGTTGAAAACTCGGGCTGAGCATCGAGAAGATGCTG
GTGATGCTGATGCT
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