FC930341

Overview
NameFC930341
Unique NameFC930341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig369 contig Ccv1_Contig369:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 69/143 (48.25%), Postives = 94/143 (65.73%), Query Frame = 2
Query:  209 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            K+  K  Y  KL  LLE+Y  I + + DNV S Q+H IR+ L G++VVLMGKNTM++R ++     T    +  L+P + GNVG +FT GDLKEV+ ++   KV APAR G +AP DV +P GNTG++  +TSF Q L +PTK
Sbjct:    4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPE--YERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTK 144          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.258e-32
Identity = 68/143 (47.55%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  209 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            K+  K  Y  KL  LLEEY  I + + DNV S Q+H IR+ L    VVLMGKNTM++R ++       +  +  L+P + GNVG +FT GDLKE++ ++   KV APAR G VAP+DV +P GNTG++  +TSF Q L +PTK
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTK 144          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 72/146 (49.32%), Postives = 91/146 (62.33%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+  IR  L G +VVLMGKNTMM++ IR H E   N+A   L+P + GNVG +FTK DL EV+  +   KV A AR G +AP DV VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.052e-30
Identity = 72/146 (49.32%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL++Y +  V  ADNVGS Q+  IR  L G +VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL E++  +   KV A AR G +AP DV VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+  IR  L G +VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL E++  +   KV A AR G +AP +V VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+  IR  L G +VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL E++  +   KV A AR G +AP +V VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+  IR  L G +VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL E++  +   KV A AR G +AP +V VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+  IR  L G +VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL E++  +   KV A AR G +AP +V VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+  IR  L G +VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL E++  +   KV A AR G +AP +V VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.583e-29
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 2
Query:  200 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +  +A  K  Y  K+ QLL +Y +  +  ADNVGS Q+  IR  L G ++VLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL EV+  +   KV A AR G +AP +V VP  NTGL   +TSF Q L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
The following BLAST results are available for this feature:
BLAST of FC930341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_NEUCR6.570e-3348.2560S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN4.258e-3247.5560S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_RANSY2.337e-3049.3260S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_CHICK3.052e-3049.3260S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_RAT1.160e-2947.9560S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_PIG1.160e-2947.9560S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_MOUSE1.160e-2947.9560S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_HUMAN1.160e-2947.9560S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN1.160e-2947.9560S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_ICTPU2.583e-2947.9560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]

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Properties
Property NameValue
Genbank descriptionC34006E02EF PostHarvC1 Citrus clementina cDNA clone C34006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930341 ID=FC930341; Name=FC930341; organism=Citrus clementina; type=EST; length=639bp
GAAAGCCTCACAGATAATTCTCGGGTTTTCTCTTGTACACTTCTTTCACT
CTCTTTGTATCTCGTTGAGGTTAAAGAGACCGCAATTCCGCTGCTGTCCG
CCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAATTTAC
AACTTTTTACCACCAACAAAAGTAGAACCAAATCCACCAAATGGTAGTGA
AAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATGCCAG
TTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCGCCGACAACGTGGG
GTCCAATCAACTCCACAACATTCGTAGGGGTCTGCCTGGAGACTCCGTTG
TGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCACGCT
GAGAAGACCGGCAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCACGG
CAATGTTGGGTTGATTTTCACAAAAGGAGATTTGAAGGAAGTGAAACAGG
AGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCT
CCAATAGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACTCCTCCCA
GACCTCCTTCTGCCAGGTGCTTCACATTCCCACCAAGAT
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