FC930343

Overview
NameFC930343
Unique NameFC930343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930343 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 1
Query:   43 SKKITLKSSDGEAFEVDEAVALESQTIKHMI---------------------------------EDDCADNGI--PLPNVTSKILSKVIEYCKKHVEASKSD-DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 501
            +  + L S +GE F VD+ +A  S  +K+ +                                 +DD  D+ I  P+PNV S +L KVIE+ + H +++  D D   S     + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP         N+WA
Sbjct:    3 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of FC930343 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 1
Query:  121 IKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLT 378
            IK M EDDCADNGIPLPNVTSKIL  VIEYCKKHV  SK         ++DLK WD +F+ K++Q+ LFD+++AANYLNI+SLLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVVESK---------EEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of FC930343 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 46/141 (32.62%), Postives = 80/141 (56.74%), Query Frame = 1
Query:   52 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADN---GIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 459
            I L+++DG   +V++ VA+    I + +I+     +    I LP  V   +LS + +YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D T
Sbjct:   18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFHQVPGRSNK--------ERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150          
BLAST of FC930343 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 44/141 (31.21%), Postives = 80/141 (56.74%), Query Frame = 1
Query:   52 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCA---DNGIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 459
            I L+++DG   +V++ VA+    I + +I+       ++ I LP  V   + S +++YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +D T
Sbjct:   18 IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCRFHQLPGRSNK--------ERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLT 150          
The following BLAST results are available for this feature:
BLAST of FC930343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_YEAST1.757e-2738.10Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK6_ARATH1.179e-2365.52SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH4.646e-1232.62SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH3.933e-1131.21SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionC34006E04EF PostHarvC1 Citrus clementina cDNA clone C34006E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930343 ID=FC930343; Name=FC930343; organism=Citrus clementina; type=EST; length=717bp
GGTTTCAAGAGTGTGTTGGATCGATCGATCAGAATGTCAACGAGTAAGAA
AATCACGCTGAAGAGCTCGGATGGAGAGGCGTTCGAGGTCGATGAAGCAG
TGGCGTTGGAATCGCAGACGATCAAGCATATGATTGAGGACGATTGCGCC
GACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTCTAAGGT
CATCGAGTACTGCAAGAAGCACGTCGAGGCATCTAAGTCCGACGATCGGG
CCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGATTTCGTC
AAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAAACTACCT
GAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCAGACATGA
TTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAACATCAAGAAC
GACTTTACCCCAGAAGAGGAGGAAGAGGTTCGTCGGGAGAATCAGTGGGC
TTTTGAGTGAAAGGATCTCAAATGACCAATTTGTAATTGTGTCTTTTCTT
TTTTGTTTTGCCTTCTTTTTGTTGTTGGTGTTGACTCAAATGTCTTTAGC
TGGTAAAAGCATCAAACCATTATTGTTTTAATGTCATATCAGCCCAACCT
TCTCTGTATCATTAATTGTGAAGTCATTTTGGATCTTGTTAGTGATGTTA
ATATGGTATATGTTCTT
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