FC930350

Overview
NameFC930350
Unique NameFC930350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930350_ssr35 microsatellite FC930350_ssr35:35..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15294 contig Ccv1_Contig15294:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  251 CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANL 730
            C +AA  GL+FG D+GV  G  A+P    +F   +   TQ+                  SS+          + +            I  I F+AG  F+ AA N+ +LI+ R+LLG  VG A+   PL+LSEIAP +IRG +  ++QL +TIGIL A L
Sbjct:   19 CFLAALAGLLFGLDIGVIAG--ALPFIADEF--QITSHTQEW---------------VVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYL 159          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 56/160 (35.00%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  251 CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANL 730
            C +AA  GL+FG D+GV  G  A+P    +F   +   TQ+                  SS+          + +            I  I F+AG  F+ AA N+ +LI+ R+LLG  VG A+   PL+LSEIAP +IRG +  ++QL +TIGIL A L
Sbjct:   19 CFLAALAGLLFGLDIGVIAG--ALPFIADEF--QITSHTQEW---------------VVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYL 159          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFA 724
            V V    A  GGL+FGYD GV  G             VV   +  G +       N G +  TS+  L  L     A              IA I  I G    V A +L  +IVGR ++G GVG A+  +PL+LSEIAP++IRG L I++ L +T G + A
Sbjct:   87 VWVLAFAAGIGGLLFGYDTGVISGAL-----------VVIGTSLGGHELT-----NGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIA 232          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: RCO3_NEUCR (Probable glucose transporter rco-3 OS=Neurospora crassa GN=rco-3 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.064e-14
Identity = 54/168 (32.14%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  233 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVN 736
            P ++V  +  ATGGL+ GYD G   G+ AM  F K  F   Y     G    Y K     + + ++   +  L A     +            I    F+ G    V A N+ +L+ GR + G G+G  +  VPL+ SE+AP  IRG L   +QL++T+G+L A +VN
Sbjct:   20 PAIMVG-LFVATGGLLLGYDTGTINGILAMKSF-KDHFSTGYI-DGNGQPGIYPKESALIVAMLSAGTAIGALLAAPLGDHYGRRRSLIGAIGI----FVIGAILQVCAYNIDLLVAGRTVAGVGIGIVSVLVPLYQSEMAPKWIRGTLVCTYQLSITMGLLAAAVVN 180          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: ITR2_SCHPO (Myo-inositol transporter 2 OS=Schizosaccharomyces pombe GN=itr2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.815e-14
Identity = 54/178 (30.34%), Postives = 86/178 (48.31%), Query Frame = 2
Query:  206 GVEFEA-KITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVN 736
            G  FEA KI+  + V   +A   GL+FGYD GV  G  A+                 G D  +     Q  +L TS+   A L +   + +             A   F+ G     A++N+AM++VGR ++G G+G  +  VP++++E+AP R+RG L I++ + +T G L A  +N
Sbjct:   69 GEGFEAEKISSWIWVLSAVAGISGLLFGYDTGVISGALAV----------------LGSDLGHVLSSGQK-ELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLN 229          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: HGT1_CANAL (High-affinity glucose transporter OS=Candida albicans GN=HGT1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 49/173 (28.32%), Postives = 81/173 (46.82%), Query Frame = 2
Query:  224 KITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            KI  +  ++ I +   G+MFG+D+          H+++ F              N    D QG    TSS+ L     +  +S+                F++ G A   + QN A LI+GRI+ G GVGF +   P++ +E+AP +IRG +  +FQ  VT+GI+    +++G
Sbjct:   25 KIYNVFFIASI-STIAGMMFGFDISSMSAFIGAEHYMRYF--------------NSPGSDIQGF--ITSSMALGSFFGSIASSFVSEPFGRRLSLLTCAFFWMVGAAIQSSVQNRAQLIIGRIISGIGVGFGSAVAPVYGAELAPRKIRGLIGGMFQFFVTLGIMIMFYLSFG 180          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: RGT2_YEAST (High-affinity glucose transporter RGT2 OS=Saccharomyces cerevisiae GN=RGT2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 46/164 (28.05%), Postives = 73/164 (44.51%), Query Frame = 2
Query:  254 IMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIA-GIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            I  A GG +FGYD G+   +T MP+      P            N+  +    + +  S L L        A Y             +  + F  G +  VA+  L +LIVGR++ G G+G  +  VPL+ +E A   +RG +   +Q  +TIG+L ++ V+ G
Sbjct:  104 IFVAVGGFLFGYDTGLINSITDMPYVKTYIAP------------NHSYFTTSQIAILVSFLSLGTFFGALIAPYISDSYGRKPTIMFSTAVIFSIGNSLQVASGGLVLLIVGRVISGIGIGIISAVVPLYQAEAAQKNLRGAIISSYQWAITIGLLVSSAVSQG 255          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: ARAE_KLEOX (Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 51/159 (32.08%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  254 IMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANL 730
            I AA  GL+FG D+GV  G  A+P     F  V+  R Q+                  SS+ L       F  +            +  + F+AG   +  A ++ ML+V RI+LG  VG A+   PL+LSE+A   +RG +  ++QL VT+GI+ A L
Sbjct:   27 IAAAVAGLLFGLDIGVIAG--ALPFITDHF--VLSSRLQEW---------------VVSSMMLGAAIGALFNGWLSFRLGRKYSLMVGAVLFVAGSVGSAFATSVEMLLVARIVLGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVMAFL 166          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: HGT1_KLULA (High-affinity glucose transporter OS=Kluyveromyces lactis GN=HGT1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 49/168 (29.17%), Postives = 76/168 (45.24%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            + V   +A   GLMFG+D+     +     + K +F      T  G                T+S+       +  +              I    +I G     AAQ+ AMLIVGR++ G G+GF + A P++ SEI+P +IRG ++ LFQ +VT+GI+    + YG
Sbjct:   28 IYVIGFIACISGLMFGFDIASMSSMIGTDVY-KDYFSNPDSLTYGG---------------ITASMAGGSFLGSLISPNFSDAFGRKVSLHICAALWIIGAILQCAAQDQAMLIVGRVISGMGIGFGSSAAPVYCSEISPPKIRGTISGLFQFSVTVGIMVLFYIGYG 179          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: KHT2_KLULA (Hexose transporter 2 OS=Kluyveromyces lactis GN=KHT2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.301e-12
Identity = 48/171 (28.07%), Postives = 74/171 (43.27%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAA-QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V + C+M A GG +FG+D G   G      F+++F        ++ D S+Y      GL   +F     + G+      S             I  + ++ G+   +A+        +GRI+ G GVG  +   P+ +SE AP  IRG L   +QL +T GI      NYG
Sbjct:   62 VSILCLMVAFGGFVFGWDTGTISGFVNQTDFIRRF------GQEKADGSHYLSNVRTGLIVSIFNIGCAIGGI----ILSKLGDMYGRRIGLMIVVLIYVVGIIIQIASIDKWYQYFIGRIISGLGVGGISVLSPMLISETAPKHIRGTLVSFYQLMITFGIFLGYCTNYG 222          
The following BLAST results are available for this feature:
BLAST of FC930350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GALP_ECOLI6.665e-1735.00Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL66.665e-1735.00Galactose-proton symporter OS=Escherichia coli O6 ... [more]
ITR1_SCHPO8.148e-1535.19Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
RCO3_NEUCR1.064e-1432.14Probable glucose transporter rco-3 OS=Neurospora c... [more]
ITR2_SCHPO1.815e-1430.34Myo-inositol transporter 2 OS=Schizosaccharomyces ... [more]
HGT1_CANAL4.044e-1428.32High-affinity glucose transporter OS=Candida albic... [more]
RGT2_YEAST2.621e-1328.05High-affinity glucose transporter RGT2 OS=Saccharo... [more]
ARAE_KLEOX2.621e-1332.08Arabinose-proton symporter OS=Klebsiella oxytoca G... [more]
HGT1_KLULA3.423e-1329.17High-affinity glucose transporter OS=Kluyveromyces... [more]
KHT2_KLULA1.301e-1228.07Hexose transporter 2 OS=Kluyveromyces lactis GN=KH... [more]

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Properties
Property NameValue
Genbank descriptionC34006E12EF PostHarvC1 Citrus clementina cDNA clone C34006E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930350 ID=FC930350; Name=FC930350; organism=Citrus clementina; type=EST; length=743bp
GTCTCATTATCACATACTTCATCTCACAATAATCTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCTACTTCTTCTTGTTCT
TCTTCGTAATTACGCTTAACGAGAGAATTAGAATTGGAATATCGTTTCAG
TTTTTGATAATTAAGGATGCCAGGTGGTGGATTCTCGGCGTCCGTGCCGC
CGGCCGGAGTCGAGTTTGAGGCCAAGATCACGCCGATTGTTATCGTTTCA
TGCATAATGGCCGCCACTGGAGGCCTCATGTTTGGCTACGATGTTGGTGT
TTCTGGGGGAGTGACGGCGATGCCACACTTCTTGAAGAAGTTCTTTCCAG
TAGTGTATAGGAGGACACAGCAAGGGGATGATAGCAATTACTGCAAGTAC
GATAATCAAGGGCTACAATTGTTCACATCATCCTTGTACTTGGCCGGCTT
AACTGCCACCTTCTTTGCATCATACACAACTAGGAGGCTTGGCAGGAGGC
TGACCATGCTGATTGCTGGTATCTTCTTCATTGCTGGTGTTGCCTTTAAT
GTTGCTGCCCAGAACCTTGCCATGCTCATCGTTGGAAGGATCCTGCTTGG
TTGTGGGGTTGGTTTCGCTAATCAGGCTGTGCCATTGTTCCTATCGGAAA
TTGCTCCNAACAGGATACGTGGAGGGCTTAACATACTCTTTCAGCTTAAC
GTCACCATCGGCATTCTTTTCGCCAACTTGGTCAATTATGGGA
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