FC930350

Overview
NameFC930350
Unique NameFC930350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 54/189 (28.57%), Postives = 83/189 (43.92%), Query Frame = 2
Query:  173 GGGFSASVPPAGVEFEAKITP-IVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVN 736
            GGG       A  +F+   TP  V V  + +A GG +FGYD GV  G   +   LK+   +                D    +L  SS   A   +                  +A   F AG A   AA N   L+ GR+++G G+G A+  VP++++E++P  +RG L  +  L +T G  FA++V+
Sbjct:   39 GGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLL---LKRQLSL----------------DALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVD 208          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 51/186 (27.42%), Postives = 81/186 (43.55%), Query Frame = 2
Query:  209 VEFEAKITPIVIVSCIMAATGGLMFGYDVG-VSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFA-------NLVNYG 742
            + F   ++P +I    +A+  G MFGYD G +S  + ++                 G D ++        ++ T++  L  L  + FA               + + F+ G    V+A     + VGR+++G GVG  +   PLF+SEIAP  IRG L ++  L +T G L A       N VN G
Sbjct:   76 ITFNQSLSPFIITLTFVASISGFMFGYDTGYISSALISI-----------------GTDLDHKVLTYGEKEIVTAATSLGALITSIFAGTAADIFGRKRCLMGSNLMFVIGAILQVSAHTFWQMAVGRLIMGFGVGIGSLIAPLFISEIAPKMIRGRLTVINSLWLTGGQLVAYGCGAGLNYVNNG 244          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 54/170 (31.76%), Postives = 78/170 (45.88%), Query Frame = 2
Query:  230 TPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAG-LTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVN 736
            TP ++   + A  GGL+FGYD GV  G      F+K+ F  V ++T               LQ    S+ +AG +       +            IA + F+ G      A    ++IVGRI +G GVG A+   PL++SE +P RIRG L     L +T G  F+ L+N
Sbjct:   24 TPYIMRLALSAGIGGLLFGYDTGVISGALL---FIKEDFDEVDKKTW--------------LQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLIN 176          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: HXT3_YEAST (Low-affinity glucose transporter HXT3 OS=Saccharomyces cerevisiae GN=HXT3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 48/171 (28.07%), Postives = 74/171 (43.27%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNL-AMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V + C+M A GG +FG+D G   G  A   FL++F        +  D S Y      GL   +F     + G+                    +  + +I G+   +A+ N      +GRI+ G GVG      P+ +SE+AP  +RG L   +QL +T+GI      N+G
Sbjct:   62 VSICCVMVAFGGFVFGWDTGTISGFVAQTDFLRRF------GMKHKDGSYYLSKVRTGLIVSIFNIGCAIGGIILAKLGDMYGRKMGLI----VVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVAPKEMRGTLVSCYQLMITLGIFLGYCTNFG 222          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: HXT1_YEAST (Low-affinity glucose transporter HXT1 OS=Saccharomyces cerevisiae GN=HXT1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 46/171 (26.90%), Postives = 75/171 (43.86%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNL-AMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V + C+M A GG +FG+D G   G  A   FL++F        +  D S+Y      GL   +F     + G+                    +  + +  G+   +A+ N      +GRI+ G GVG      P+ +SE+AP+ +RG L   +Q+ +T+GI      N+G
Sbjct:   65 VSICCVMVAFGGFIFGWDTGTISGFVAQTDFLRRF------GMKHHDGSHYLSKVRTGLIVSIFNIGCAIGGIVLAKLGDMYGRRIGLI----VVVVIYTIGIIIQIASINKWYQYFIGRIISGLGVGGITVLSPMLISEVAPSEMRGTLVSCYQVMITLGIFLGYCTNFG 225          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: HXT4_YEAST (Low-affinity glucose transporter HXT4 OS=Saccharomyces cerevisiae GN=HXT4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 47/171 (27.49%), Postives = 74/171 (43.27%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNL-AMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V + C+M A GG +FG+D G   G  A   F+++F        +  D + Y      GL   +F     + G+                    +  + +I G+   +A+ N      +GRI+ G GVG      P+ +SE++P  IRG L   +QL +T+GI      NYG
Sbjct:   71 VSICCLMVAFGGFVFGWDTGTISGFVAQTDFIRRF------GMKHHDGTYYLSKVRTGLIVSIFNIGCAIGGIILAKLGDMYGRKMGLI----VVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHIRGTLVSCYQLMITLGIFLGYCTNYG 231          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 49/159 (30.82%), Postives = 70/159 (44.03%), Query Frame = 2
Query:  263 ATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNY 739
            A GGL++GYD GV  G      F+    P+      +G              L  S L L  +  +  +              +  I FI G      +Q + MLI  R++LG  VG +   VP++LSE+AP +IRG L  +  L +  GIL A +VNY
Sbjct:   15 ALGGLLYGYDTGVISGALL---FINNDIPLT--TLTEG--------------LVVSMLLLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNY 154          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 52/164 (31.71%), Postives = 72/164 (43.90%), Query Frame = 2
Query:  263 ATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFT-----SSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNY 739
            A GG ++GYD GV  G      F+KK                       GL  FT     SSL +  +  +  A               A + F  G      A N  ++++ RI+LG  VG +   VPL+LSE+AP   RG L+ L QL +T+GIL + +VNY
Sbjct:   14 ALGGALYGYDTGVISGAIL---FMKK---------------------ELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNY 153          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: RAG1_KLULA (Low-affinity glucose transporter OS=Kluyveromyces lactis GN=RAG1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 49/177 (27.68%), Postives = 74/177 (41.81%), Query Frame = 2
Query:  221 AKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAA-QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            AK    V + C+M A GG +FG+D G   G      FL++F        ++ D S+Y      GL   +F     + G+  +                    I ++ G+   +A+        +GRI+ G GVG      P+ +SE AP  +RG L   +QL +T GI      NYG
Sbjct:   57 AKEYIFVSLCCVMVAFGGFVFGWDTGTISGFVNQTDFLRRF------GQEKADGSHYLSNVRTGLIVSIFNIGCAVGGIVLSNIGDRWGRRIGLITVI----IIYVIGIIIQIASVDKWYQYFIGRIISGLGVGGITVLSPMLISETAPKHLRGTLVSCYQLMITFGIFLGYCTNYG 223          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: ARAE_ECOLI (Arabinose-proton symporter OS=Escherichia coli (strain K12) GN=araE PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 49/159 (30.82%), Postives = 72/159 (45.28%), Query Frame = 2
Query:  254 IMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANL 730
            + AA  GL+FG D+GV  G  A+P     F  V+  R Q+                  SS+ L       F  +               I F+ G   +  A ++ MLI  R++LG  VG A+   PL+LSE+A   +RG +  ++QL VT+GI+ A L
Sbjct:   27 VAAAVAGLLFGLDIGVIAG--ALPFITDHF--VLTSRLQEW---------------VVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFL 166          
The following BLAST results are available for this feature:
BLAST of FC930350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
MYCT_HUMAN1.699e-1228.57Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
ITR1_YEAST2.219e-1227.42Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
INT4_ARATH2.219e-1231.76Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
HXT3_YEAST2.219e-1228.07Low-affinity glucose transporter HXT3 OS=Saccharom... [more]
HXT1_YEAST2.898e-1226.90Low-affinity glucose transporter HXT1 OS=Saccharom... [more]
HXT4_YEAST3.785e-1227.49Low-affinity glucose transporter HXT4 OS=Saccharom... [more]
CSBC_BACSU3.785e-1230.82Probable metabolite transport protein csbC OS=Baci... [more]
YWTG_BACSU8.432e-1231.71Putative metabolite transport protein ywtG OS=Baci... [more]
RAG1_KLULA8.432e-1227.68Low-affinity glucose transporter OS=Kluyveromyces ... [more]
ARAE_ECOLI8.432e-1230.82Arabinose-proton symporter OS=Escherichia coli (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006E12EF PostHarvC1 Citrus clementina cDNA clone C34006E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930350 ID=FC930350; Name=FC930350; organism=Citrus clementina; type=EST; length=743bp
GTCTCATTATCACATACTTCATCTCACAATAATCTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCTACTTCTTCTTGTTCT
TCTTCGTAATTACGCTTAACGAGAGAATTAGAATTGGAATATCGTTTCAG
TTTTTGATAATTAAGGATGCCAGGTGGTGGATTCTCGGCGTCCGTGCCGC
CGGCCGGAGTCGAGTTTGAGGCCAAGATCACGCCGATTGTTATCGTTTCA
TGCATAATGGCCGCCACTGGAGGCCTCATGTTTGGCTACGATGTTGGTGT
TTCTGGGGGAGTGACGGCGATGCCACACTTCTTGAAGAAGTTCTTTCCAG
TAGTGTATAGGAGGACACAGCAAGGGGATGATAGCAATTACTGCAAGTAC
GATAATCAAGGGCTACAATTGTTCACATCATCCTTGTACTTGGCCGGCTT
AACTGCCACCTTCTTTGCATCATACACAACTAGGAGGCTTGGCAGGAGGC
TGACCATGCTGATTGCTGGTATCTTCTTCATTGCTGGTGTTGCCTTTAAT
GTTGCTGCCCAGAACCTTGCCATGCTCATCGTTGGAAGGATCCTGCTTGG
TTGTGGGGTTGGTTTCGCTAATCAGGCTGTGCCATTGTTCCTATCGGAAA
TTGCTCCNAACAGGATACGTGGAGGGCTTAACATACTCTTTCAGCTTAAC
GTCACCATCGGCATTCTTTTCGCCAACTTGGTCAATTATGGGA
back to top