FC930350

Overview
NameFC930350
Unique NameFC930350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930350_ssr35 microsatellite FC930350_ssr35:35..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15294 contig Ccv1_Contig15294:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: ARAE_ECO57 (Arabinose-proton symporter OS=Escherichia coli O157:H7 GN=araE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 49/159 (30.82%), Postives = 72/159 (45.28%), Query Frame = 2
Query:  254 IMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANL 730
            + AA  GL+FG D+GV  G  A+P     F  V+  R Q+                  SS+ L       F  +               I F+ G   +  A ++ MLI  R++LG  VG A+   PL+LSE+A   +RG +  ++QL VT+GI+ A L
Sbjct:   27 VAAAVAGLLFGLDIGVIAG--ALPFITDHF--VLTSRLQEW---------------VVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLGIVLAFL 166          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: QAY_NEUTR (Quinate permease OS=Neurospora terricola GN=qa-y PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 53/176 (30.11%), Postives = 78/176 (44.32%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFAS---YXXXXXXXXXXXXIA-GIFFIAGVAFNVAA----QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V     +A+    M GYD    G   A+P F K+F              ++  Y    L L  S++        FF S   +            IA  + FI G A  +AA    + +A +I GR+L G GVG A+  VP+++SE+AP  +RG L  +++L   IG L    +NYG
Sbjct:   21 VYTCAAIASFASCMIGYDSAFIGTTLALPSFKKEF--------------DFASYTPGALALLQSNIVSVYQAGAFFGSLFAFATSYFLGRRKSLIAFSVVFIIGAAIMLAADGQGRGIAPIIAGRVLAGIGVGGASNMVPIYISELAPPAVRGRLVGIYELGWQIGGLVGFWINYG 182          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 50/169 (29.59%), Postives = 74/169 (43.79%), Query Frame = 2
Query:  233 PIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAG-LTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVN 736
            P V+     A  GGL+FGYD GV  G      +++  F  V R T               LQ    S+ +AG +       +            +A   F+ G     AA N ++L+VGR+ +G GVG A+   PL++SE +P +IRG L       +T G   + L+N
Sbjct:   26 PYVLRLAFSAGIGGLLFGYDTGVISGALL---YIRDDFKSVDRNTW--------------LQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLIN 177          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: HXT7_YEAST (High-affinity hexose transporter HXT6 OS=Saccharomyces cerevisiae GN=HXT7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 47/171 (27.49%), Postives = 74/171 (43.27%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNL-AMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V + CIM A GG +FG+D G   G      F+++F        +  D +NY      GL   +F     + G+      S             +  + +I G+   +A+ N      +GRI+ G GVG      P+ +SE++P  +RG L   +QL +T GI      N+G
Sbjct:   65 VSIMCIMIAFGGFVFGWDTGTISGFINQTDFIRRF------GMKHKDGTNYLSKVRTGLIVSIFNIGCAIGGI----ILSKLGDMYGRKVGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHLRGTLVSCYQLMITAGIFLGYCTNFG 225          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: HXT6_YEAST (High-affinity hexose transporter HXT6 OS=Saccharomyces cerevisiae GN=HXT6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 47/171 (27.49%), Postives = 74/171 (43.27%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNL-AMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V + CIM A GG +FG+D G   G      F+++F        +  D +NY      GL   +F     + G+      S             +  + +I G+   +A+ N      +GRI+ G GVG      P+ +SE++P  +RG L   +QL +T GI      N+G
Sbjct:   65 VSIMCIMIAFGGFVFGWDTGTISGFINQTDFIRRF------GMKHKDGTNYLSKVRTGLIVSIFNIGCAIGGI----ILSKLGDMYGRKVGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHLRGTLVSCYQLMITAGIFLGYCTNFG 225          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: QAY_NEUCR (Quinate permease OS=Neurospora crassa GN=qa-y PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 54/176 (30.68%), Postives = 78/176 (44.32%), Query Frame = 2
Query:  239 VIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTS---SLYLAGLTATFFASYXXXXXXXXXXXXIA-GIFFIAGVAFNVAA----QNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            V     +A+    M GYD    G   A+P F K+F              ++  Y    L L  S   S+Y AG       +Y            IA  + FI G A  +AA    + +  +I GR+L G GVG A+  VP+++SE+AP  +RG L  +++L   IG L    +NYG
Sbjct:   21 VYTCAAIASFASCMIGYDSAFIGTTLALPSFTKEF--------------DFASYTPGALALLQSNIVSVYQAGAFFGCLFAYATSYFLGRRKSLIAFSVVFIIGAAIMLAADGQGRGIDPIIAGRVLAGIGVGGASNMVPIYISELAPPAVRGRLVGIYELGWQIGGLVGFWINYG 182          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: ITR2_YEAST (Myo-inositol transporter 2 OS=Saccharomyces cerevisiae GN=ITR2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 47/173 (27.17%), Postives = 75/173 (43.35%), Query Frame = 2
Query:  209 VEFEAKITPIVIVSCIMAATGGLMFGYDVG-VSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFA 724
            + F   I+P +I    +A+  G MFGYD G +S  + ++   L               D+    Y  +  +L T++  L  L  +  A               + + F+ G    + A     +  GR+++G GVG  +   PLF+SEIAP  IRG L ++  L +T G L A
Sbjct:   99 ITFNQSISPFIITLTFVASISGFMFGYDTGYISSALISINRDL---------------DNKVLTYGEK--ELITAATSLGALITSVGAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIGSLISPLFISEIAPKMIRGRLTVINSLWLTGGQLIA 254          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 51/170 (30.00%), Postives = 79/170 (46.47%), Query Frame = 2
Query:  230 TPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAG-LTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVN 736
            TP ++   + A  GGL+FGY+ GV  G      ++K+ F  V  +T               LQ    S+ +AG +       +            IA + F+ G    V A    ++I+GR+L+G GVG A+   PL++SE++P RIRG L     L +T G   + L+N
Sbjct:   23 TPYIMRLALSAGIGGLLFGYNTGVIAGALL---YIKEEFGEVDNKTW--------------LQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLIN 175          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: GTR5_BOVIN (Solute carrier family 2, facilitated glucose transporter member 5 OS=Bos taurus GN=SLC2A5 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 52/193 (26.94%), Postives = 87/193 (45.08%), Query Frame = 2
Query:  197 PPAGVEFEAKITPIVIVSCIMAATGG-LMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQG----------LQLFTSSLY-LAGLTATFFASYXXXXXXXXXXXXIAGIFFIAG---VAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANL 730
            P   V+ E ++TP+++++ ++AA G    +GY+V     + +   F+K F+             NY  YD  G          L   T S++   G   +                    IF I     + F+  A++  M+IV R+L+G   G ++  VP++L E+AP   RG L ++ QL +TIGIL A +
Sbjct:    3 PQDPVKREGRLTPVIVLATLIAAFGSSFQYGYNVAA---INSPSEFMKDFY-------------NYTYYDRVGEYMNEFYLTLLWSVTVSMFPFGGFLGSLMVGPLVNNLGRKGTLLFNNIFSIVPALLMGFSELAKSFEMIIVARVLVGICAGLSSNVVPMYLGELAPKNWRGALGVVPQLFITIGILVAQI 179          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: GAL2_YEAST (Galactose transporter OS=Saccharomyces cerevisiae GN=GAL2 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 59/196 (30.10%), Postives = 82/196 (41.84%), Query Frame = 2
Query:  173 GGGFSASVPPAGVEFEAK-ITPIVIVS--CIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGL--QLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNL-AMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            G   S SVP   +E   K ++  V VS  C+  A GG MFG+D G   G      FL++F        +  D ++Y      GL   +F       G+      S             I    +I G+   +A+ N      +GRI+ G GVG      P+ +SEIAP  +RG L   +QL +T GI      NYG
Sbjct:   49 GSEGSQSVP---IEIPKKPMSEYVTVSLLCLCVAFGGFMFGWDTGTISGFVVQTDFLRRF------GMKHKDGTHYLSNVRTGLIVAIFNIGCAFGGI----ILSKGGDMYGRKKGLSIVVSVYIVGIIIQIASINKWYQYFIGRIISGLGVGGIAVLCPMLISEIAPKHLRGTLVSCYQLMITAGIFLGYCTNYG 231          
The following BLAST results are available for this feature:
BLAST of FC930350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ARAE_ECO578.432e-1230.82Arabinose-proton symporter OS=Escherichia coli O15... [more]
QAY_NEUTR1.101e-1130.11Quinate permease OS=Neurospora terricola GN=qa-y P... [more]
INT2_ARATH1.101e-1129.59Probable inositol transporter 2 OS=Arabidopsis tha... [more]
HXT7_YEAST1.101e-1127.49High-affinity hexose transporter HXT6 OS=Saccharom... [more]
HXT6_YEAST1.101e-1127.49High-affinity hexose transporter HXT6 OS=Saccharom... [more]
QAY_NEUCR1.878e-1130.68Quinate permease OS=Neurospora crassa GN=qa-y PE=3... [more]
ITR2_YEAST1.878e-1127.17Myo-inositol transporter 2 OS=Saccharomyces cerevi... [more]
INT3_ARATH1.878e-1130.00Probable inositol transporter 3 OS=Arabidopsis tha... [more]
GTR5_BOVIN2.453e-1126.94Solute carrier family 2, facilitated glucose trans... [more]
GAL2_YEAST2.453e-1130.10Galactose transporter OS=Saccharomyces cerevisiae ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006E12EF PostHarvC1 Citrus clementina cDNA clone C34006E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930350 ID=FC930350; Name=FC930350; organism=Citrus clementina; type=EST; length=743bp
GTCTCATTATCACATACTTCATCTCACAATAATCTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCTACTTCTTCTTGTTCT
TCTTCGTAATTACGCTTAACGAGAGAATTAGAATTGGAATATCGTTTCAG
TTTTTGATAATTAAGGATGCCAGGTGGTGGATTCTCGGCGTCCGTGCCGC
CGGCCGGAGTCGAGTTTGAGGCCAAGATCACGCCGATTGTTATCGTTTCA
TGCATAATGGCCGCCACTGGAGGCCTCATGTTTGGCTACGATGTTGGTGT
TTCTGGGGGAGTGACGGCGATGCCACACTTCTTGAAGAAGTTCTTTCCAG
TAGTGTATAGGAGGACACAGCAAGGGGATGATAGCAATTACTGCAAGTAC
GATAATCAAGGGCTACAATTGTTCACATCATCCTTGTACTTGGCCGGCTT
AACTGCCACCTTCTTTGCATCATACACAACTAGGAGGCTTGGCAGGAGGC
TGACCATGCTGATTGCTGGTATCTTCTTCATTGCTGGTGTTGCCTTTAAT
GTTGCTGCCCAGAACCTTGCCATGCTCATCGTTGGAAGGATCCTGCTTGG
TTGTGGGGTTGGTTTCGCTAATCAGGCTGTGCCATTGTTCCTATCGGAAA
TTGCTCCNAACAGGATACGTGGAGGGCTTAACATACTCTTTCAGCTTAAC
GTCACCATCGGCATTCTTTTCGCCAACTTGGTCAATTATGGGA
back to top