FC930351

Overview
NameFC930351
Unique NameFC930351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BACFR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis GN=dxr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 74/161 (45.96%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA ++   ILP DSEHSA+FQC+ G
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLARQYRTPILPVDSEHSAVFQCLAG 165          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BACFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 74/161 (45.96%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA ++   ILP DSEHSA+FQC+ G
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLARQYRTPILPVDSEHSAVFQCLAG 165          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLOBH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.425e-34
Identity = 69/161 (42.86%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSDKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRG 162          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLOB1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.425e-34
Identity = 69/161 (42.86%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSDKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRG 162          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_MOOTA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=dxr PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 82/162 (50.62%), Postives = 107/162 (66.05%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP--EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 718
            K I+VLGSTGSIG QTL++VA H  +FRV AL A  N  LLA QV+RF+P++  + +E    E    LA +   P   ILAGE+G++ AA       VV  +VG   LK  +AA+EAGKDIALANKE L+A G  V+  A + + +I+P DSEHSAIFQC++
Sbjct:    3 KEITVLGSTGSIGRQTLEVVAAHPGRFRVAALVAARNDELLAAQVRRFRPRLAVLLDE----ERARVLAEMVSDPGIRILAGEEGLMAAACLEGVELVVAAMVGIRSLKAILAALEAGKDIALANKEVLVAAGQLVMDRARRLSRQIIPVDSEHSAIFQCLR 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_ANASK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter sp. (strain K) GN=dxr PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 74/161 (45.96%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++  A    + ILP DSEHSAI Q + G
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLMARAAAKGVPILPVDSEHSAIHQSLVG 159          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_ANAD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=dxr PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 74/161 (45.96%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++  A    + ILP DSEHSAI Q + G
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLMARAAAKGVAILPVDSEHSAIHQSLVG 159          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_DESAP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulforudis audaxviator (strain MP104C) GN=dxr PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 78/159 (49.06%), Postives = 101/159 (63.52%), Query Frame = 2
Query:  236 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQC 712
            PK I+VLGSTGSIG Q LD+V  H +KF+VV LAAG N  LLA+Q   F P VV+V +    + ++  L       E+ AGE G+   A  P A  ++  + G  GL PTV AI++GKD+ALANKETL+  G  V  LA    ++ILP DSEHSA++QC
Sbjct:    2 PKRIAVLGSTGSIGRQALDVVRSHPEKFKVVGLAAGRNWELLAEQAAEFAPGVVSVWSGDDAERVRVRLGG---GVEVHAGEPGLSAVATWPAADILLVAVAGTTGLVPTVEAIQSGKDVALANKETLVVAGELVTELALGRGVQILPVDSEHSAVWQC 157          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLONN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium novyi (strain NT) GN=dxr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 73/161 (45.34%), Postives = 105/161 (65.22%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I +LG+TGSIGTQTLD++ +  +KF++VA +A  +   +   +++F P   A+ ++    ++K+       K  +L G  G+I+ +   +   VVT IVG  GL PT+ AI AGKDIALANKETL+ GG  V+  A ++N+KILP DSEH AIFQC+QG
Sbjct:    2 KNICILGATGSIGTQTLDVIEKESNKFKLVAFSANKSYEKIITIIEKFNPVYGAINDKETFLKVKDHCNINNIKINLLYGMDGLIKISTLEEVELVVTSIVGMIGLVPTLEAINAGKDIALANKETLVTGGELVMKAAKQNNVKILPVDSEHGAIFQCLQG 162          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLOAB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium acetobutylicum GN=dxr PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 72/161 (44.72%), Postives = 105/161 (65.22%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K IS+LG+TGSIGTQTLD++    + F+++A++A SN   + + +  FKP++V + ++   +++ +     + K  +  G +   E A + D+  VVT IVG  GL PT+ AI+AGKDIALANKETL+  G  V   A K+ + ILP DSEH AIFQC+QG
Sbjct:    2 KNISILGATGSIGTQTLDVIRNDSEAFKLLAVSAHSNFKKMIEIIDEFKPELVVMVDKLAYNKVLDYCCEKKLKTSVKVGYEAFNEVASYKDSNIVVTSIVGMIGLIPTLEAIKAGKDIALANKETLVVAGELVTKEAKKYGVNILPVDSEHGAIFQCLQG 162          
The following BLAST results are available for this feature:
BLAST of FC930351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_BACFR5.685e-3445.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACFN5.685e-3445.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBH7.425e-3442.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOB17.425e-3442.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MOOTA9.697e-3450.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASK9.697e-3445.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAD29.697e-3445.961-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESAP1.266e-3349.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLONN1.654e-3345.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOAB1.654e-3344.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006F01EF PostHarvC1 Citrus clementina cDNA clone C34006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930351 ID=FC930351; Name=FC930351; organism=Citrus clementina; type=EST; length=721bp
GAAAGCTTTGATGGCATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTC
TCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCA
GGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAG
AATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAG
CTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCA
GTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGC
GGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATA
TAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCT
GTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGT
TGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTG
CCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCA
GGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTT
GGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAG
CTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCC
ATATTTCAGTGTATTCAAGGC
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