FC930351

Overview
NameFC930351
Unique NameFC930351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_RALPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ralstonia pickettii (strain 12J) GN=dxr PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.076e-32
Identity = 67/157 (42.68%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            ++VLG+TGSIG  TLD+V  H DK+ V AL A +    LA   + F+P++  + + +  D +++ L       EI +G + + EAA HPD   V+  IVG AGL+PT+AA+ AGK + LANKE L+  G   +    +H   +LP DSEH+AIFQC+
Sbjct:    4 LTVLGATGSIGDSTLDVVRRHPDKYSVFALTANAQADKLAVLCREFRPKMAVLGSAAAADALRDQLGTEAAGIEICSGTKALEEAAAHPDCDAVMAAIVGAAGLRPTLAAVRAGKRVLLANKEALVMSGALFMDAVREHGATVLPIDSEHNAIFQCL 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_TOLAT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=dxr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.641e-31
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            +++LGSTGSIG  TLDIV  H D+F V AL A   +  +      F P    + +E+    +KEALA  + K E+L G   + + A H     V+  IVG AGL P +AAI+ GK + LANKE L+  G   +  AH ++ +ILP DSEH+AIFQC+
Sbjct:    4 LTILGSTGSIGRSTLDIVRRHPDRFAVTALTANQGVAQMMSDCLEFHPSYAVMADEASAIALKEALAGHKLKTEVLTGTDALCQVAAHSSVDIVMAAIVGAAGLLPAMAAIKKGKTVLLANKEALVMSGRLFMDAAHHYSARILPVDSEHNAIFQCL 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PSE14 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.641e-31
Identity = 69/163 (42.33%), Postives = 98/163 (60.12%), Query Frame = 2
Query:  233 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            GP+ I++LG+TGSIG  TLD+VA H  +++V AL   S +  L     R  PQ   V ++ +  ++++ LA       +L GE G+ E A HP    V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+ G
Sbjct:    3 GPQHITILGATGSIGLSTLDVVARHPSRYQVFALTGFSRLDELLALCVRHTPQYAVVPDQFVARKLQDDLAAAVLDTRVLVGEGGLCEVAAHPRVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGDLFMQAVRQSGAVLLPIDSEHNAIFQCLPG 165          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_THERP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 71/158 (44.94%), Postives = 105/158 (66.46%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 718
            +S+LGSTGSIG QTL++VA H D+FRVVALAA S I  L +QV+ F+P++VA+  ESL     +          +++G  G++EAA +  A  VV  + G +G++PT+AA  AGK IALANKE+++  GP +  +  +   ++ P DSEHSA++Q +Q
Sbjct:    5 VSLLGSTGSIGRQTLEVVAAHPDRFRVVALAARSQIDALQEQVRIFRPELVAIAQESLGISFPDT--------RVVSGPGGLVEAATYETADIVVIALSGNSGIEPTLAAAAAGKTIALANKESVVCAGPLLRDIQSRTGCQVRPVDSEHSALWQLLQ 154          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SALTY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Salmonella typhimurium GN=dxr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            K +++LGSTGSIG  TLD+V  + D FRV+AL AG N+  +A+Q   F P+   + + S  +++K  L     + E+L+G+Q   E A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G   +    + N ++LP DSEH+AIFQ +
Sbjct:    2 KQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAEQCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SALPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Salmonella paratyphi A GN=dxr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            K +++LGSTGSIG  TLD+V  + D FRV+AL AG N+  +A+Q   F P+   + + S  +++K  L     + E+L+G+Q   E A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G   +    + N ++LP DSEH+AIFQ +
Sbjct:    2 KQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAEQCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SALCH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Salmonella choleraesuis GN=dxr PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            K +++LGSTGSIG  TLD+V  + D FRV+AL AG N+  +A+Q   F P+   + + S  +++K  L     + E+L+G+Q   E A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G   +    + N ++LP DSEH+AIFQ +
Sbjct:    2 KQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAEQCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_RALSO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ralstonia solanacearum GN=dxr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 67/157 (42.68%), Postives = 97/157 (61.78%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            I+VLG+TGSIG  TLD+V  H D++RV AL A + +  LA   + F+P +  V + +  + +++ L       +I  G + + EAA HPD   V+  IVG AGL+PT+AA+ AGK + LANKE L+  G   +    +H   +LP DSEH+AIFQC+
Sbjct:    4 ITVLGATGSIGDSTLDVVRRHPDRYRVFALTANTQVDKLAALCRVFRPAMAVVGSATAAEVLRDQLGAEATGIDIRFGPEALEEAAAHPDCDAVMAAIVGAAGLRPTLAAVRAGKRVLLANKEALVMSGALFMDAVRQHGATVLPIDSEHNAIFQCL 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_LYSSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lysinibacillus sphaericus (strain C3-41) GN=dxr PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.449e-31
Identity = 73/163 (44.79%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI--LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K IS+LG+TGSIG QT DI+ E  + F++VA ++G N+    + +   KP++V+V+ E      ++AL   +E P I    G QG++E A HP +  +V  ++G  GL+ T+AAI  GK IA+ANKETL+  G  V+  A K+N  ILP DSEHSAIFQ + G
Sbjct:    2 KKISLLGATGSIGWQTYDILKEQREAFQLVAFSSGKNMEKTREMIDNLKPELVSVQLE------EDALLLAKEYPTIHFTFGAQGLVEVATHPASTVLVNAVLGSVGLESTLAAIRMGKTIAIANKETLVTAGHLVMAEAKKYNATILPVDSEHSAIFQSMNG 158          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SALTI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Salmonella typhi GN=dxr PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            K +++LGSTGSIG  TLD+V  + D FRV+AL AG N+  +A+Q   F P+   + + S  +++K  L     + E+L+G+Q   E A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G   +    + N ++LP DSEH+AIFQ +
Sbjct:    2 KQLTILGSTGSIGCSTLDVVHHNPDSFRVIALVAGKNVARMAEQCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL 160          
The following BLAST results are available for this feature:
BLAST of FC930351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_RALPJ9.076e-3242.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_TOLAT2.641e-3143.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSE142.641e-3142.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THERP3.449e-3144.941-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SALTY3.449e-3143.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SALPA3.449e-3143.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SALCH3.449e-3143.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RALSO3.449e-3142.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LYSSC3.449e-3144.791-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SALTI4.504e-3143.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006F01EF PostHarvC1 Citrus clementina cDNA clone C34006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930351 ID=FC930351; Name=FC930351; organism=Citrus clementina; type=EST; length=721bp
GAAAGCTTTGATGGCATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTC
TCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCA
GGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAG
AATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAG
CTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCA
GTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGC
GGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATA
TAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCT
GTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGT
TGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTG
CCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCA
GGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTT
GGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAG
CTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCC
ATATTTCAGTGTATTCAAGGC
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