FC930351

Overview
NameFC930351
Unique NameFC930351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_ACIBT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dxr PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA--NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + +  E+K   A  N+ +  ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A  H   +LP DSEH+AIFQ +
Sbjct:    5 VCILGVTGSIGRSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIA-ELKTLFAQQNISDI-DVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAARDHQALLLPVDSEHNAIFQSL 161          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_ACIB5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain AB0057) GN=dxr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA--NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + +  E+K   A  N+ +  ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A  H   +LP DSEH+AIFQ +
Sbjct:    5 VCILGVTGSIGRSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIA-ELKTLFAQQNISDI-DVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAARDHQALLLPVDSEHNAIFQSL 161          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_ACIB3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain AB307-0294) GN=dxr PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 69/159 (43.40%), Postives = 104/159 (65.41%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA--NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + +  E+K   A  N+ +  ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A  H   +LP DSEH+AIFQ +
Sbjct:    5 VCILGVTGSIGRSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIA-ELKTLFAQQNISDI-DVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAARDHQALLLPVDSEHNAIFQSL 161          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_DESDG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfovibrio desulfuricans (strain G20) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.504e-30
Identity = 72/162 (44.44%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  236 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            P+ + +LGSTGSIGT  L +V    + FR+ ALA   N+ LLA Q   ++P  +AV N +  DE+   L     +P I  G++G    A  P+A  V++  VG AGL+ TVAA  AGK IALANKE+L+  G  +  L H+    +LP DSEH+AIFQ +QG
Sbjct:   18 PRSLVLLGSTGSIGTSALRVVERQPELFRITALAGARNVRLLARQAAAYRPPHLAVINGNAADELASLLP-AGYRPRIHTGQEGYEFLAALPEADCVLSAQVGAAGLRATVAAARAGKTIALANKESLVLAGGLIRRLCHETGASVLPVDSEHNAIFQALQG 178          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_ACIBS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acinetobacter baumannii (strain SDF) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.504e-30
Identity = 68/158 (43.04%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP-EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            + +LG TGSIG  TL I+ +H DK+ V A++A S I+ L +  K+F+P+VV V  + +  E+K   A       ++LAG++G+++ A H D   V+  IVG AGL PT+AA++AGK + LANKE L+  G  ++  A  H   +LP DSEH+AIFQ +
Sbjct:    5 VCILGVTGSIGQSTLKILGQHPDKYSVFAVSAHSRISELVEICKQFRPKVVVVPEQKIA-ELKTLFAQQNISAIDVLAGQEGLVDIASHTDVDIVMAAIVGAAGLLPTLAAVKAGKRVLLANKEALVMSGEIMMQAARDHQALLLPVDSEHNAIFQSL 161          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PSESM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pseudomonas syringae pv. tomato GN=dxr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.495e-30
Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 2
Query:  233 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            GP+ I++LG+TGSIG  TLD+VA H   ++V AL   S +  L     +  PQ   V  +    ++++ LA       +L GE G+ E A HP    V+  IVG AGL+PT+AA+EAGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+ G
Sbjct:    3 GPQHITILGATGSIGLSTLDVVARHPTLYQVFALTGFSRLDELLALCIKHTPQYAVVPEQVAARKLQDDLAAAGLDTRVLVGEGGLCEVAAHPMVDAVMAAIVGAAGLRPTLAAVEAGKKVLLANKEALVMSGALFMQAVRQSGAVLLPIDSEHNAIFQCLPG 165          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SHIFL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shigella flexneri GN=dxr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 67/159 (42.14%), Postives = 97/159 (61.01%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            K +++LGSTGSIG  TLD+V  + + FRVVAL AG N+T + +Q   F P+   + +E+    +K  L     + E+L+G+Q   + A   +   V+  IVG AGL PT+AAI AGK I LANKE+L+  G   +    +   ++LP DSEH+AIFQ +
Sbjct:    2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEEVDQVMAAIVGAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BACSU (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus subtilis GN=dxr PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 71/161 (44.10%), Postives = 105/161 (65.22%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I +LG+TGSIG QTLD++  H+D+F++V+++ G NI      ++ F+P+ V+V +     ++K+   + E   +I  GE+G+IEAA   +   VV  ++G  GL PT+ AIE  K IALANKETL+  G  V   A K+++ +LP DSEHSAIFQ +QG
Sbjct:    2 KNICLLGATGSIGEQTLDVLRAHQDQFQLVSMSFGRNIDKAVPMIEVFQPKFVSVGDLDTYHKLKQMSFSFE--CQIGLGEEGLIEAAVMEEVDIVVNALLGSVGLIPTLKAIEQKKTIALANKETLVTAGHIVKEHAKKYDVPLLPVDSEHSAIFQALQG 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_RHOCS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxr PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.449e-29
Identity = 70/170 (41.18%), Postives = 104/170 (61.18%), Query Frame = 2
Query:  200 AVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 709
            +VT       DG + ++VLGSTGS+G+ T++++  + +++R VAL A  N+  LA Q +R +P+V  V +E+   ++K+ALA         AG   V+EAA+ P A  V+  IVG AGL+PT+AA   G  +A ANKE L+  G  ++    +H   +LP DSEHSAIFQ
Sbjct:    4 SVTPRHSTGGDGIRSVTVLGSTGSVGSNTVELIEAYPERYRTVALVARRNVAALAGQARRLRPEVAVVADEAHYADLKDALAGT--GIAAAAGPAAVVEAAQRP-ADWVMAAIVGAAGLEPTLAAARRGAIVAFANKECLVCAGELLMAEVRRHGATLLPVDSEHSAIFQ 170          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_IDILO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Idiomarina loihiensis GN=dxr PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.449e-29
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  245 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 715
            I+VLG+TGSIG  TL++V+ H D F+V AL A S I+ +A+   +  PQ   + + +   E+K AL   +   +++ G+Q + E +   +   V+  IVG AGL PT+AAI+AGKD+ LANKE L+  G   +  A +   +I+P DSEH+AIFQC+
Sbjct:    4 ITVLGATGSIGQNTLNVVSRHPDDFQVFALTAHSQISAMAELCVKHNPQYAVMGSYNAAAELK-ALLGQQTSTQVMYGDQALAEVSSDAEVDVVMAAIVGAAGLSPTLAAIDAGKDVLLANKEALVMSGQLFIDHAQRSGARIIPVDSEHNAIFQCL 159          
The following BLAST results are available for this feature:
BLAST of FC930351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_ACIBT4.980e-3043.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIB54.980e-3043.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIB34.980e-3043.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESDG6.504e-3044.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACIBS6.504e-3043.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PSESM8.495e-3041.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHIFL1.109e-2942.141-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACSU1.109e-2944.101-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOCS1.449e-2941.181-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_IDILO1.449e-2942.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006F01EF PostHarvC1 Citrus clementina cDNA clone C34006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930351 ID=FC930351; Name=FC930351; organism=Citrus clementina; type=EST; length=721bp
GAAAGCTTTGATGGCATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTC
TCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCA
GGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAG
AATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAG
CTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCA
GTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGC
GGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATA
TAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCT
GTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGT
TGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTG
CCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCA
GGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTT
GGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAG
CTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCC
ATATTTCAGTGTATTCAAGGC
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