FC930351

Overview
NameFC930351
Unique NameFC930351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.795e-46
Identity = 98/167 (58.68%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL AG N+ LL +Q++R +P++VA+ +E+LL E+K+ L  ++        PE++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+QG
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDRPAQCPEMVGGPDGLEVAASWGSAELVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQG 168          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SYNSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9605) GN=dxr PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.442e-45
Identity = 98/165 (59.39%), Postives = 120/165 (72.73%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV----EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K ISVLGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL +QV+R +P+VVA+ +  LL E++E L +      + P+++ G  G+  AA    A  VVTGIVGCAGL PT+AAI AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+QG
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFRVVALTAGRNLKLLVEQVQRHRPEVVALADSDLLPELQERLKDAGVTGADAPQLVGGADGLNVAAAWDSADLVVTGIVGCAGLLPTLAAIRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQG 166          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.884e-45
Identity = 96/167 (57.49%), Postives = 122/167 (73.05%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K ISVLGSTGSIGTQTL I  E  D+F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+QG
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPDQFKIVALTAGKNLDLVTKQIETHQPEVVSLADESLLPELTRRINSLNEDSKILKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQG 168          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 97/167 (58.08%), Postives = 122/167 (73.05%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV------EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL+AG N++LL  Q++R +P VVA+ +++LL E+K+ L  +      E  P ++ G +G+   A    A  VVTGIVGCAGL PT+AAI AGKD+A+ANKETLIA GP VLP   K   ++LPADSEHSAIFQC+QG
Sbjct:    2 KAISVLGSTGSIGTQTLAIVEDFPDQFRVVALSAGRNLSLLVSQIQRHRPDVVALADQALLAELKDRLMALPADTRPEPLPHLVGGPEGLDVVASWDSADLVVTGIVGCAGLLPTLAAIRAGKDLAVANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQG 168          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.481e-45
Identity = 95/167 (56.89%), Postives = 122/167 (73.05%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE------KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K ISVLGSTGSIGTQTL I  E  ++F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E      KP ++AG +G+  AA    A  VVTGIVGCAGL PT+AAIEAGKD+ALANKETLIA GP V+P   K   ++LPADSEHSAIFQC+QG
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFKIVALTAGKNLDLVIKQIETHQPEVVSLADESLLSELSSRINSLTENKKIVKKPLLMAGAEGLNTAAAWGSADLVVTGIVGCAGLLPTLAAIEAGKDLALANKETLIAAGPVVIPALKKSGSRLLPADSEHSAIFQCLQG 168          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.595e-44
Identity = 92/159 (57.86%), Postives = 120/159 (75.47%), Query Frame = 2
Query:  251 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            +LGSTGSIGTQTL+IV+E  DKF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+AGK+IALANKETLIA G  V+P   +   ++LPADSEHSAIFQCIQG
Sbjct:    1 MLGSTGSIGTQTLEIVSELPDKFKVVALSAGRNIDLLTEQVSQHKPEVIAIEDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKAGKNIALANKETLIAAGSVVIPALKESKSRLLPADSEHSAIFQCIQG 159          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 93/163 (57.06%), Postives = 122/163 (74.85%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN--VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I+VLGSTGSIGTQTL+IV E  +KF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N  +   P +L G + +   A    A TV+TGIVGCAGL PT++AI+A K+IALANKETLIA G  V+P   ++  ++LPADSEHSAIFQCIQG
Sbjct:    2 KYITVLGSTGSIGTQTLEIVRELPNKFKVVALSAGRNIDLLTEQVSQHKPEVIAIDDENLLTDLKNNINNLGISNPPIVLGGREAINSVAAWDSADTVITGIVGCAGLIPTMSAIKASKNIALANKETLIAAGSVVIPALKENKSRLLPADSEHSAIFQCIQG 164          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.034e-43
Identity = 92/160 (57.50%), Postives = 117/160 (73.12%), Query Frame = 2
Query:  251 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE---ALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            +LGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL  Q++R +P++VA+ N  LL E+++   AL    ++P+++ G  G+  AA    A  VVTGIVGCAGL PT+AA+ AGKD+ALANKETLIA GP VLP   K   ++LPADSEHSAIFQC+QG
Sbjct:    1 MLGSTGSIGTQTLQIAEEFPEQFRVVALTAGQNLDLLVQQIQRHQPELVALANADLLPELQQRLDALGTDRKRPQLVGGPDGLNIAASWESADLVVTGIVGCAGLLPTLAAVRAGKDLALANKETLIAAGPVVLPELKKSGSRLLPADSEHSAIFQCLQG 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 92/163 (56.44%), Postives = 122/163 (74.85%), Query Frame = 2
Query:  251 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            +LGSTGSIGTQTL+I  E  ++FRVVAL AG+N++L+ +Q++R  P+VVA+ + SLL E+K+ L  +  +      P++LAG +G+  AA    A  VV+GIVGCAGL PT+AAI+AGKD+ALANKETLIA  P VLP   +   ++LPADSEHSAIFQC+QG
Sbjct:    1 MLGSTGSIGTQTLEIAEEFPERFRVVALTAGTNVSLVVEQIQRHHPEVVALADASLLPELKQQLNALPSEQQPPHLPQLLAGPEGLNVAASWDSADLVVSGIVGCAGLLPTLAAIKAGKDLALANKETLIAAAPVVLPELKRSGSRLLPADSEHSAIFQCLQG 163          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_GEOUR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter uraniireducens (strain Rf4) GN=dxr PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K +++LGSTGSIG  TLDIVA H DKF+VVAL AG N+ LL  Q++ F PQ+VAV NE L  ++++ L+   + P IL G +G+I AA   DA  VV  IVG AGL PT AAI+AGKDIALANKETL+  G  ++ +   H +K+ P DSEHSA+FQ +QG
Sbjct:    2 KKLAILGSTGSIGVSTLDIVAAHPDKFQVVALTAGGNLDLLKKQIEEFSPQLVAVLNEELAQKLQQMLSG--KGPAILHGVEGMIAAATAADADMVVAAIVGAAGLVPTAAAIKAGKDIALANKETLVTAGRLIMDMVKAHGVKLYPVDSEHSAVFQSLQG 160          
The following BLAST results are available for this feature:
BLAST of FC930351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_SYNS93.795e-4658.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNSC1.442e-4559.391-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM11.884e-4557.491-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS35.481e-4558.081-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT5.481e-4556.891-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMP1.595e-4457.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM53.552e-4457.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX1.034e-4357.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMM1.763e-4356.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOUR1.143e-4255.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006F01EF PostHarvC1 Citrus clementina cDNA clone C34006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930351 ID=FC930351; Name=FC930351; organism=Citrus clementina; type=EST; length=721bp
GAAAGCTTTGATGGCATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTC
TCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCA
GGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAG
AATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAG
CTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCA
GTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGC
GGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATA
TAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCT
GTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGT
TGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTG
CCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCA
GGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTT
GGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAG
CTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCC
ATATTTCAGTGTATTCAAGGC
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