FC930351

Overview
NameFC930351
Unique NameFC930351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PROMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus GN=dxr PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.407e-42
Identity = 91/163 (55.83%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  251 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK------PEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            +LGSTGSIGTQTL+I  E  ++F+VVAL AG N+ LL  Q++  +P+VVA+  + +L E++E L ++  K      P ++AG  G+  AA    A  VVTGIVGCAGL PT+AAI+AGKDIALANKETLIA GP V+P   +   ++LPADSEHSAIFQC+QG
Sbjct:    1 MLGSTGSIGTQTLEIAKECPEQFKVVALTAGRNLDLLIKQIQEHQPEVVALARKDILPELQERLNSLTGKERPNALPHLVAGNDGLNIAASWHSADLVVTGIVGCAGLLPTLAAIKAGKDIALANKETLIAAGPVVIPELKRSGSRLLPADSEHSAIFQCLQG 163          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CHLT3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=dxr PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.815e-41
Identity = 83/161 (51.55%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIGT +L++++   ++F    L+AGSN+ LLA+Q KRF+P+ V + NESL  E++  LA   E  EI++GE+G+ E +R  D   V+  +VG AGLKPTV A++AGKD+ LANKETL+ GG  +  L  +H  K+LP DSEHSAIFQC+ G
Sbjct:    2 KRITILGSTGSIGTNSLEVISRFPEQFCATYLSAGSNVKLLAEQAKRFRPKGVVIMNESLEGELRSLLAG--ESIEIMSGEEGLCEISRRSDTDFVIGSVVGFAGLKPTVEALKAGKDVGLANKETLVVGGEIITSLVEEHGCKMLPVDSEHSAIFQCLVG 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BREBN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxr PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.815e-41
Identity = 84/161 (52.17%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGS+GT TL++V +H + F VVA+AAG+NI LL  QV+ FKP++V+V NE    E+++ LA  + +PEI+ G +G+   ARH  A  V+T +VG  G+ PT+AAIEAGK I LANKETL++ GP V+  A +  + I+P DSEHSA++QC+QG
Sbjct:    2 KKIALLGSTGSVGTSTLEVVGQHPEDFSVVAMAAGTNIDLLTLQVETFKPELVSVGNEKAAVELRDRLAG-KSQPEIVYGAEGLELVARHEAANFVMTAVVGSVGVAPTLAAIEAGKTIGLANKETLVSAGPVVMKRAKEKGVSIIPVDSEHSAVYQCLQG 161          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BACHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus halodurans GN=dxr PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN-VEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K ISVLG+TGSIGTQTLD++A H DKFR+VA++ G N+TL  +Q+ +FKP +V+V    + DE ++ LA+ V E   ++ GE+G+IE A    A  +V  ++G  GL PT+AAIEA K IALANKETL+  G  V   A +H +K+LP DSEHSAIFQ +QG
Sbjct:    2 KGISVLGATGSIGTQTLDVLANHRDKFRLVAMSVGKNLTLAEEQIHQFKPPLVSV----MTDEDRKTLASKVPEGTRVVCGEEGLIEVATAEKAEILVNAVIGSVGLAPTLAAIEAKKTIALANKETLVTAGHLVTEKAREHGVKLLPVDSEHSAIFQALQG 159          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_GEOSL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sulfurreducens GN=dxr PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 84/161 (52.17%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIG  TL++V+ H D+FRVVAL AG+N+ +L  Q++ F+PQ+V+V +E L  E+  +L     KPEI  G +G+I AA   DA  VV  IVG AGL PT AAI AGKD+ALANKETL+  G  ++ L    N+++ P DSEHSA+FQ ++G
Sbjct:    2 KNITILGSTGSIGVSTLEVVSAHPDRFRVVALTAGNNLEMLRQQIETFRPQMVSVLSEKLAVELDRSLPGY--KPEIHYGVEGLIAAATAGDAHMVVAAIVGAAGLVPTAAAIRAGKDVALANKETLVTAGRLIMDLVRDKNVRLYPVDSEHSAVFQSMEG 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_EUBE2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dxr PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 85/161 (52.80%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K +S+LGSTGSIGTQTLD++  + D   VVALAAG+ ++ LA+QV+ FKPQ+V +  E L+ E+K  + +++ K  I++G++G+IEAA    A  VVT +VG  G+ PTV AI+A KDIALANKETL+  G  ++ LA + N+ I P DSEHSAIFQC+ G
Sbjct:    2 KNVSILGSTGSIGTQTLDVIRRNAD-INVVALAAGTRVSDLAEQVREFKPQLVCIGKEELVPELKTLIGDMDVK--IVSGDEGLIEAATIESAEIVVTAVVGMMGITPTVEAIKAHKDIALANKETLVCAGHIIMSLAKECNVNIYPVDSEHSAIFQCLNG 159          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CHLTE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium tepidum GN=dxr PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.933e-40
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K +S+LGSTGSIG  TLD+V  H ++F + ALA G ++ +L  Q+  F+P +V+VR+E+  + +K  L   + KPEIL G +G  E A    A  VV+ IVG AGL PTV AIEAGKDIALANKETL+  G  V  L  KH++K+LP DSEHSAIFQ + G
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRRHPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLG--DHKPEILCGLEGAAEVAAVDGADMVVSAIVGAAGLVPTVRAIEAGKDIALANKETLVVAGQLVSDLVKKHDVKLLPVDSEHSAIFQSLVG 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CHLPB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=dxr PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.545e-39
Identity = 84/161 (52.17%), Postives = 111/161 (68.94%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K +S+LGSTGSIG  TLD+V +H +KF V  LA G +I LLA+Q+K F+P +V+VR+++    ++E L +  EKPEIL G +G         +  VV+ IVG AGL PTV+AI+AGKDIALANKETL+  G  V  L  +H + +LP DSEHSAIFQ + G
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPEKFNVTGLAEGHDINLLAEQIKEFRPDIVSVRDKASAGLLREQLGS--EKPEILWGIEGAAAVGAAEGSEMVVSAIVGAAGLVPTVSAIKAGKDIALANKETLVVAGQLVSDLVKEHKVTLLPVDSEHSAIFQSLSG 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PROA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dxr PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 81/161 (50.31%), Postives = 111/161 (68.94%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K +S+LGSTGSIG  TLD+V +H D+F +  LA G ++TLLA+Q++ FKP +V+VR+E+  ++++E +   E  PEI  G +G         +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L  +H +++LP DSEHSAIFQ + G
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPDRFTITGLAEGHDVTLLAEQIREFKPSIVSVRDEASANQLRELIG--ESGPEIRWGIEGAAVVGEADGSDMVVSAIVGAAGLVPTVRAIKAGKDIALANKETLVVAGQLVSELVREHKVQLLPVDSEHSAIFQSLSG 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_SYMTH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Symbiobacterium thermophilum GN=dxr PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 83/163 (50.92%), Postives = 112/163 (68.71%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV--EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIGTQ LD++  H  +FRVVALAAG  +  LA+Q  RF+P +++V +      ++  L     + +PEI  G +G+I AA HP++  V+T +VG  G++PT+AAIEAGKDIALANKETL+A G  V   A    +K+LP DSEHSAIFQ + G
Sbjct:    3 KGIAILGSTGSIGTQALDVIDHHPGRFRVVALAAGRQVERLAEQALRFRPALLSVADADAAAALRALLLAEAGDYRPEIAWGREGLIRAATHPESGLVLTSVVGAMGVEPTLAAIEAGKDIALANKETLVAAGELVTAAAQARGVKLLPVDSEHSAIFQSLAG 165          
The following BLAST results are available for this feature:
BLAST of FC930351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_PROMA7.407e-4255.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLT32.815e-4151.551-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BREBN2.815e-4152.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACHD2.383e-4053.091-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSL4.065e-4052.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBE25.308e-4052.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLTE6.933e-4052.801-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLPB1.545e-3952.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROA22.635e-3950.311-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYMTH3.441e-3950.921-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006F01EF PostHarvC1 Citrus clementina cDNA clone C34006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930351 ID=FC930351; Name=FC930351; organism=Citrus clementina; type=EST; length=721bp
GAAAGCTTTGATGGCATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTC
TCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCA
GGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAG
AATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAG
CTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCA
GTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGC
GGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATA
TAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCT
GTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGT
TGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTG
CCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCA
GGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTT
GGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAG
CTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCC
ATATTTCAGTGTATTCAAGGC
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