FC930351

Overview
NameFC930351
Unique NameFC930351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:175..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLOBK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=dxr PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.333e-34
Identity = 69/161 (42.86%), Postives = 109/161 (67.70%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LG+TGSIGTQTLD++ + +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G
Sbjct:    2 KNITILGATGSIGTQTLDVIRKEKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRG 162          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PORGI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++ LA  + + ILP DSEHSAIFQ + G
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIMRLAQDNQVPILPVDSEHSAIFQALLG 161          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PORG3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIGTQTLDI+  + D F V  L A +N+ LL  Q + ++P++V + N+     I+EALA++  K  +  G + + +A   PD   VVT +VG +GL PT+ AIEA K IALANKETL+  G  ++ LA  + + ILP DSEHSAIFQ + G
Sbjct:    3 KNIAILGSTGSIGTQTLDIIHLNPDLFDVYLLTANNNVDLLIRQAREYRPEIVVIANDQKYHLIQEALADLPIK--VWCGAEAIADAVTAPDIDMVVTAMVGYSGLLPTIKAIEARKMIALANKETLVVAGELIMRLAQDNQVPILPVDSEHSAIFQALLG 161          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLOBL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 69/161 (42.86%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSYKKVIEIIKEFKPKYTVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRG 162          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLOBJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 69/161 (42.86%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRG 162          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BACV8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 718
            K I++LGSTGSIGTQ L ++ EH D + V AL A + + LL +Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+  +VG AGL+PT+ AI+AGK IALANKETL+  G  +  LA++++  +LP DSEHSAIFQC++
Sbjct:    3 KQIAILGSTGSIGTQALQVIEEHPDLYEVYALTANNRVDLLVEQARKFMPEAVVIANEEKYLQLKEALSDLPVK--VYAGADALSQIVESQPIDIVLASMVGYAGLRPTINAIKAGKAIALANKETLVVAGELINALANQYHTPVLPVDSEHSAIFQCLE 160          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BACTN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides thetaiotaomicron GN=dxr PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 75/161 (46.58%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIGTQ L ++ EH D +   AL A + + LL  Q ++F+P+VV + NE    ++KEAL+++  K  + AG   V +         V+T +VG AGLKPT+ AI A K IALANKETL+  G  +  LA +++  ILP DSEHSA+FQC+ G
Sbjct:   10 KQIAILGSTGSIGTQALQVIEEHPDLYEAYALTANNRVELLIAQARKFQPEVVVIANEEKYAQLKEALSDLPIK--VYAGIDAVCQIVEAGPVDMVLTAMVGYAGLKPTINAIRAKKAIALANKETLVVAGELINQLAQQYHTPILPVDSEHSAVFQCLAG 168          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_PARUW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Protochlamydia amoebophila (strain UWE25) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 73/161 (45.34%), Postives = 107/161 (66.46%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LGSTGSIG  TL +    +++ +VVA+AA  NI LL  Q K F P ++AV N +   E+++ L        +LAG +G++ AA + +A  V++ + G  GL+PT+ AI+AGKD+ LANKE L++GG  ++ L  + NI +LP DSEHSAIFQC+ G
Sbjct:    2 KHIAILGSTGSIGKNTLQVARHLKERIKVVAIAARENIDLLEAQSKEFCPDIIAVFNNAKAYELQKRLPG----KTVLAGMEGLLAAASYSEADLVISAMTGTMGLQPTIEAIKAGKDVGLANKEALVSGGAIIMKLVKEKNINLLPIDSEHSAIFQCLNG 158          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_CLOBM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 69/161 (42.86%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K I++LG+TGSIGTQTLD++ +  ++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G
Sbjct:    2 KNITILGATGSIGTQTLDVIRKGNEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCVDSKIDTKVLKGMEGMIYISTLEEINTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRG 162          
BLAST of FC930351 vs. ExPASy Swiss-Prot
Match: DXR_BACSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus clausii (strain KSM-K16) GN=dxr PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 72/161 (44.72%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  239 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 721
            K IS+LGSTGSIGTQTLD++ ++ D+F + ALA G+N+ L  +Q+K F+P++V+V+     ++ +       +  E L GE+G+ E AR+ ++  VVT I G  GL PT++AI+A K +A+ANKETL++ G  V+  A ++++ ++P DSEHSAIFQ + G
Sbjct:    2 KQISLLGSTGSIGTQTLDVIRDYPDQFTLSALACGTNLELCRNQIKEFQPKLVSVQRP---EDAQTLAGEFGDSIEFLYGEEGLKEVARYSESDIVVTAITGSIGLLPTLSAIKAKKAVAIANKETLVSAGHLVVSAAKENDVPLIPVDSEHSAIFQALNG 159          
The following BLAST results are available for this feature:
BLAST of FC930351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 436
Match NameE-valueIdentityDescription
DXR_CLOBK3.333e-3442.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PORGI4.353e-3447.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PORG34.353e-3447.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBL4.353e-3442.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBJ4.353e-3442.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACV84.353e-3445.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACTN4.353e-3446.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PARUW5.685e-3445.341-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBM5.685e-3442.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACSK5.685e-3444.721-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34006F01EF PostHarvC1 Citrus clementina cDNA clone C34006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930351 ID=FC930351; Name=FC930351; organism=Citrus clementina; type=EST; length=721bp
GAAAGCTTTGATGGCATTGAATTTGCAGTCCCCAGCTGAAATCAAGGCTC
TCTCTTTCTTGGAGACAACCAGGTCAAATCATCGCCTCCCCAAGCTCTCA
GGTGGGTTTCCTTTGAAGAGGAAGGATAATGCAACGGCGACGTTTGGTAG
AATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAG
CTGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCA
GTGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGC
GGAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATA
TAACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCT
GTTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGT
TGAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTG
CCCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCA
GGATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTT
GGCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAG
CTCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCC
ATATTTCAGTGTATTCAAGGC
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