FC930352

Overview
NameFC930352
Unique NameFC930352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_AERHH (NAD-dependent malic enzyme OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=sfcA PE=3 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 9.122e-61
Identity = 109/201 (54.23%), Postives = 157/201 (78.11%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+LL +++ E+LPV+YTPTVG+AC+++ +I+RR +GL+IS  +K +I ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+ CLP+ +DVGTNN+QLL D FY+G R  R +G+EYAE +D F+ AVK+ + + +L+QFEDFA +NA  LL +Y      FNDDIQ
Sbjct:   73 KHIYLRNIQDTNETLFYRLLTNHLTEMLPVIYTPTVGKACEEFSNIYRRARGLFISYPDKDRIDDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYCLPVVLDVGTNNQQLLNDPFYMGWRNPRISGEEYAEFVDAFIQAVKRRWPD-ILLQFEDFAQNNAMPLLNRYKNELCCFNDDIQ 272          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_AERS4 (NAD-dependent malic enzyme OS=Aeromonas salmonicida (strain A449) GN=sfcA PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.556e-60
Identity = 109/201 (54.23%), Postives = 157/201 (78.11%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+LL +++ E+LPV+YTPTVG+AC+++ +I+RR +GL+IS  +K +I ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+ CLP+ +DVGTNN+QLL D FY+G R  R +G+EYAE +D F+ AVK+ + + +L+QFEDFA +NA  LL +Y      FNDDIQ
Sbjct:   73 KHIYLRNIQDTNETLFYRLLHNHLTEMLPVIYTPTVGKACEEFSNIYRRARGLFISYPDKDRIDDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYCLPVVLDVGTNNQQLLSDPFYMGWRNPRISGEEYAEFVDAFIQAVKRRWPD-ILLQFEDFAQNNAMPLLNRYKNELCCFNDDIQ 272          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAOM_SOLTU (NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.527e-60
Identity = 107/202 (52.97%), Postives = 147/202 (72.77%), Query Frame = 2
Query:   20 AKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            AK+  +  L +RNE L+YK+L++N+EE  P+VYTPTVG  CQKY  +FRRP+G+Y S +++G+++ ++ NWP   + +IVVTDG RILGLGDLG QG+GI +GKL LY A  GI P   LP+ +DVGT+NE LLKD  Y+GL+  R  G+EY E++DEFM AV   +   V++QFEDF +  AF+LL +Y   + +FNDDIQ
Sbjct:  114 AKWRILNRLHDRNETLYYKVLMENIEEYAPIVYTPTVGLVCQKYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGIQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTDNENLLKDPLYLGLQDHRLDGEEYIEVIDEFMEAVFTRW-PHVIVQFEDFQSKWAFKLLQRYRNNYRMFNDDIQ 314          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAON_SOLTU (NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.317e-59
Identity = 105/204 (51.47%), Postives = 146/204 (71.57%), Query Frame = 2
Query:   14 SAAKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            S AK+  +  L +RNE L+Y++LIDN+++  P++YTPTVG  CQ Y  +FRRP+G+Y S K+KG+++ ++ NWP   + +IV+TDG RILGLGDLG QG+GIP+GKL +Y A  GI P   LP+ +DVGTNN++LL+D  Y+GLRQ R  G+EY  ++DEF+ AV   +  K ++QFEDF    AFE L +Y     +FNDDIQ
Sbjct:   95 SLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIFNWPSTQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQPRLEGEEYLSIVDEFVEAVHARW-PKAVVQFEDFQAKWAFETLDRYRKKFCMFNDDIQ 297          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_ACIAD (NAD-dependent malic enzyme OS=Acinetobacter sp. (strain ADP1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.934e-59
Identity = 106/201 (52.74%), Postives = 151/201 (75.12%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+L+ D++EE++P++YTPTVGEACQ++  I+RR +G++IS  ++  I ++L+N  +R+++VIV+TDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LPIT+DVGTNN+QLL D  Y+G RQ R +G EY E +D+ ++ +++ +    LIQFEDFA  NA  LL KY      FNDDIQ
Sbjct:   74 KHIYLRNIQDTNETLFYRLINDHLEEMMPIIYTPTVGEACQRFSDIYRRHRGIFISYPDREHIDDILQNVSKRNVKVIVITDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPITIDVGTNNQQLLNDPIYMGWRQPRISGDEYYEFIDQVLTGIRRRW-PHALIQFEDFAQKNAMPLLTKYRDKFCCFNDDIQ 273          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_PSYCK (NAD-dependent malic enzyme OS=Psychrobacter cryohalolentis (strain K5) GN=sfcA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.005e-59
Identity = 112/205 (54.63%), Postives = 152/205 (74.15%), Query Frame = 2
Query:   11 SSAAKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            S   K++ +  +++ NE LF+ L+  ++EE++P++YTPTVG+AC+K+  I+RR +GL+IS  E+ KI ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+ CLPI +DVGTNN+QLL D  Y+G R  R +G EY E +D F+ AVK+ + E VL+QFEDFA  NA  LL KY      FNDDIQ
Sbjct:   65 SDMDKHIYLRNIQDTNETLFHHLIEQHIEEVMPLIYTPTVGQACEKFSQIYRRKRGLFISYPERHKIDDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPILLDVGTNNQQLLDDPMYMGWRNPRISGDEYNEFVDLFIQAVKRRWPE-VLLQFEDFAQENATPLLNKYRDQLCCFNDDIQ 268          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_PSYA2 (NAD-dependent malic enzyme OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.902e-58
Identity = 109/201 (54.23%), Postives = 151/201 (75.12%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LF+ L+  ++EE++P++YTPTVG+AC+K+  I+RR +GL+IS  ++ KI ++L+N  ++ ++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+ CLPI +DVGTNN+QLL D  Y+G R +R +G EY E +D F+ AVK+ + E VL+QFEDFA  NA  LL +Y      FNDDIQ
Sbjct:   69 KHIYLRNIQDTNETLFHHLIEQHIEEVMPLIYTPTVGQACEKFSQIYRRKRGLFISYPDRHKIDDMLQNATKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPILLDVGTNNQQLLDDPMYMGWRNQRISGDEYNEFVDLFIQAVKRRWPE-VLLQFEDFAQENATPLLNRYRDQLCCFNDDIQ 268          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_PSYIN (NAD-dependent malic enzyme OS=Psychromonas ingrahamii (strain 37) GN=sfcA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.237e-58
Identity = 111/205 (54.15%), Postives = 152/205 (74.15%), Query Frame = 2
Query:   11 SSAAKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            S   K++ +  +++ NE LF+ L+ +++EE++P++YTPTVG AC+++  I+RR +GL++S  E+ KI ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+ CLPI +DVGTNN QLL D  Y+G R  R TG+EY E +D F+ AVK+ + E VL+QFEDFA  NA  LL KY      FNDDIQ
Sbjct:   65 SDLDKHIYLRNIQDTNETLFHHLIENHLEEVMPLIYTPTVGLACEQFSKIYRRKRGLFVSYPERHKIDDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPIVLDVGTNNSQLLADPMYMGWRNPRITGEEYNEFVDLFIQAVKRRWPE-VLLQFEDFAQTNATPLLNKYRDQICCFNDDIQ 268          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO12_PHOPR (NAD-dependent malic enzyme 2 OS=Photobacterium profundum GN=sfcA2 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.534e-58
Identity = 104/201 (51.74%), Postives = 147/201 (73.13%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE L+Y+L+ +++EE++P++YTPTVG AC+++ +I+RR +GL++   +KG I+++L N   + +++IV+TDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI +DVGTNN QLL D  Y+G R  R TGQEY + ++EF+ AVK  +    LIQFEDFA  NA  LL +Y      FNDDIQ
Sbjct:   70 KHIYLRNIQDTNETLYYRLIDNHIEEMMPIIYTPTVGAACEQFSNIYRRGRGLFLGYPDKGNIVDILNNAARQDVKIIVITDGERILGLGDQGIGGMGIPIGKLALYTACGGINPANTLPIVLDVGTNNTQLLSDPMYMGWRHPRITGQEYDDFVEEFIQAVKSRW-PNALIQFEDFAQKNAMPLLNRYKDKVCCFNDDIQ 269          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_SHISS (NAD-dependent malic enzyme OS=Shigella sonnei (strain Ss046) GN=sfcA PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.610e-57
Identity = 106/201 (52.74%), Postives = 149/201 (74.13%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS + +  + ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY E +DEF+ AVKQ + + VL+QFEDFA  NA  LL +Y      FNDDIQ
Sbjct:   73 KHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRITDDEYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQ 272          
The following BLAST results are available for this feature:
BLAST of FC930352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAO1_AERHH9.122e-6154.23NAD-dependent malic enzyme OS=Aeromonas hydrophila... [more]
MAO1_AERS41.556e-6054.23NAD-dependent malic enzyme OS=Aeromonas salmonicid... [more]
MAOM_SOLTU4.527e-6052.97NAD-dependent malic enzyme 62 kDa isoform, mitocho... [more]
MAON_SOLTU1.317e-5951.47NAD-dependent malic enzyme 59 kDa isoform, mitocho... [more]
MAO1_ACIAD2.934e-5952.74NAD-dependent malic enzyme OS=Acinetobacter sp. (s... [more]
MAO1_PSYCK5.005e-5954.63NAD-dependent malic enzyme OS=Psychrobacter cryoha... [more]
MAO1_PSYA21.902e-5854.23NAD-dependent malic enzyme OS=Psychrobacter arctic... [more]
MAO1_PSYIN4.237e-5854.15NAD-dependent malic enzyme OS=Psychromonas ingraha... [more]
MAO12_PHOPR5.534e-5851.74NAD-dependent malic enzyme 2 OS=Photobacterium pro... [more]
MAO1_SHISS1.610e-5752.74NAD-dependent malic enzyme OS=Shigella sonnei (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006F02EF PostHarvC1 Citrus clementina cDNA clone C34006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930352 ID=FC930352; Name=FC930352; organism=Citrus clementina; type=EST; length=711bp
AGAAATATGAAGTTCCGCTGCAAAATATGTGGCCATGATGGAACTTGAGG
AGAGAAATGAAAGACTGTTCTATAAGCTACTGATTGATAATGTTGAGGAA
CTTCTCCCAGTCGTTTACACTCCAACTGTTGGTGAAGCTTGCCAGAAATA
TGGAAGTATCTTCAGGCGTCCTCAGGGTCTATACATAAGTCTGAAAGAGA
AGGGAAAGATTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAG
GTTATTGTTGTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGG
CTGTCAGGGGATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCAC
TTGGAGGCATTCGTCCCTCAGCATGTTTGCCCATAACCGTTGATGTGGGT
ACAAACAATGAGCAATTGTTGAAGGATGAATTCTACATTGGTCTACGACA
GAGGAGGGCAACCGGACAGGAATATGCTGAACTTCTAGATGAATTCATGA
GTGCTGTCAAGCAAAATTATGGAGAAAAAGTTCTTATACAGTTTGAGGAT
TTCGCAAACCACAATGCTTTTGAGTTGCTTGCAAAATATGGCACAACTCA
TCTTGTCTTCAATGATGATATACAGGGTACAGCGTCTGTTGTTCTTGCTG
GGGTAGTTGCAGCACTGAAGTTGATTGGTGGCACACTGGCCGAGCATAGA
TTTTTGTTTCT
back to top