FC930352

Overview
NameFC930352
Unique NameFC930352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_SHIB3 (NAD-dependent malic enzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sfcA PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.991e-57
Identity = 105/201 (52.24%), Postives = 148/201 (73.63%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+L+ ++++E++PV+YTPTVG AC+++  I+RR +G++IS + +  + ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+ +DVGTNN+QLL D  Y+G R  R    EY E +DEF+ AVKQ + + VL+QFEDFA  NA  LL +Y      FNDDIQ
Sbjct:   73 KHIYLRNIQDTNETLFYRLVNNHLDEMMPVIYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRIIDDEYYEFVDEFIQAVKQRWPD-VLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQ 272          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_SHEFN (NAD-dependent malic enzyme OS=Shewanella frigidimarina (strain NCIMB 400) GN=sfcA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.044e-56
Identity = 104/201 (51.74%), Postives = 146/201 (72.64%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+L+ +N+ E++P++YTPTVG AC+++   +RR +GL+IS   K +I ++L N     ++VIVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+ CL +T+DVGT+N QLL+D  Y+G R +R  G EYAE ++EFM AV + + +  LIQFEDFA  NA  LL +Y   +  FNDDIQ
Sbjct:   70 KHIYLRNIQDTNETLFYRLVRNNISEMMPIIYTPTVGLACERFSKNYRRNRGLFISYPNKDRIDDILNNSTRHKVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYCLAVTLDVGTDNPQLLEDPMYMGWRHQRIGGDEYAEFVEEFMQAVSRRWPD-ALIQFEDFAQKNAMPLLERYKDQYCSFNDDIQ 269          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_SHEDO (NAD-dependent malic enzyme OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=sfcA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.044e-56
Identity = 104/201 (51.74%), Postives = 147/201 (73.13%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+L+ +N+ E++P++YTPTVG AC+++   +RR +GL+IS   K +I ++L N     ++VIVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LPIT+DVGT+N++LL D  Y+G R RR  GQ+YA+ ++ FM AV + + + VLIQFEDFA  NA  LL +Y   +  FNDDIQ
Sbjct:   70 KHIYLRNIQDTNETLFYRLVRNNITEMMPIIYTPTVGLACERFSKNYRRNRGLFISYSNKDRIDDILNNSTRHKVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPITLDVGTDNQELLDDPMYMGWRHRRIEGQDYADFVEAFMEAVHRRWPD-VLIQFEDFAQRNAMPLLERYKDQYCCFNDDIQ 269          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_VIBFM (NAD-dependent malic enzyme OS=Vibrio fischeri (strain MJ11) GN=sfcA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.363e-56
Identity = 108/229 (47.16%), Postives = 153/229 (66.81%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLF 709
            K++ +  +++ NE LFY+L+ +++ E++P++YTPTVG AC+ + +I+RR +GL+IS + K +I ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI +DVGTNN Q L D  Y+G R  R TG EYA+ +++F+ AV++ + E  L+QFEDFA  NA  LL +Y      FNDDIQ                   +L+E R  F
Sbjct:   70 KHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGDEYADFVEDFIQAVQRRWPE-ALVQFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTF 297          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_VIBF1 (NAD-dependent malic enzyme OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=sfcA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.363e-56
Identity = 108/229 (47.16%), Postives = 153/229 (66.81%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLF 709
            K++ +  +++ NE LFY+L+ +++ E++P++YTPTVG AC+ + +I+RR +GL+IS + K +I ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI +DVGTNN Q L D  Y+G R  R TG EYA+ +++F+ AV++ + E  L+QFEDFA  NA  LL +Y      FNDDIQ                   +L+E R  F
Sbjct:   70 KHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGDEYADFVEDFIQAVQRRWPE-ALVQFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTF 297          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_PROMH (NAD-dependent malic enzyme OS=Proteus mirabilis (strain HI4320) GN=sfcA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.780e-56
Identity = 106/201 (52.74%), Postives = 145/201 (72.14%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+LL  ++ E++P++YTPTVGEAC+ +  I+RR +GL+IS   +  I ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+ +DVGTNN Q L D  Y+G R  R TG EY E +DEF+ AVK+ +   VL+QFEDFA  NA  LL +Y      FNDDIQ
Sbjct:   73 KHIYLRNIQDTNETLFYRLLESHLTEMMPIIYTPTVGEACEHFSDIYRRARGLFISYPNRANIDDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNPQRLNDPLYMGWRHPRITGDEYNEFVDEFIQAVKRRW-PNVLLQFEDFAQKNAMPLLNRYRDELCCFNDDIQ 272          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_ENT38 (NAD-dependent malic enzyme OS=Enterobacter sp. (strain 638) GN=sfcA PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.780e-56
Identity = 104/201 (51.74%), Postives = 148/201 (73.63%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K++ +  +++ NE LFY+L+ +++EE++PV+YTPTVG AC+++  I+RR +G++IS + +  + ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+ +DVGTNN+QLL D  Y+G R  R T  EY + +D+F+ AVK  + + VL+QFEDFA  NA  LL +Y      FNDDIQ
Sbjct:   73 KHIYLRNIQDTNETLFYRLVQNHLEEMMPVIYTPTVGAACERFSEIYRRSRGVFISYENRHNMDDILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLTDPLYMGWRHPRVTDDEYYQFVDDFIQAVKHRWPD-VLLQFEDFAQKNAMPLLNRYRDEICSFNDDIQ 272          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_PHOLL (NAD-dependent malic enzyme OS=Photorhabdus luminescens subsp. laumondii GN=sfcA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.325e-56
Identity = 107/205 (52.20%), Postives = 148/205 (72.20%), Query Frame = 2
Query:   11 SSAAKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            + A K++ +  +++ NE LFY+LL  ++ E++P++YTPTVGEAC+ +  I+RR +GL+IS   K  I ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYT+ GGI P+  LP+ +DVGTNN Q L D  Y+G R  R TG+EY E +DEF+ AVK+ +   VL+QFEDFA  NA  LL +Y      FNDDIQ
Sbjct:   69 NDADKHIYLRNIQDTNETLFYRLLDAHLNEMMPIIYTPTVGEACEHFSDIYRRARGLFISHPNKAHIDDMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTSCGGISPAYTLPVVLDVGTNNPQRLNDPLYMGWRHPRITGKEYDEFVDEFIQAVKRRW-PNVLLQFEDFAQKNAMPLLNRYRHEICCFNDDIQ 272          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_BDEBA (NAD-dependent malic enzyme OS=Bdellovibrio bacteriovorus GN=sfcA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.037e-56
Identity = 105/201 (52.24%), Postives = 147/201 (73.13%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQ 625
            K+V +  L++ NE LFY L+++++ E++P++YTP VGEAC+ +  I+R  +GL+IS   K +I E+L+N  ++ ++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+ +DVGTNN+ LL D  Y+G RQ R TG+EY + +D F+ AVK+ + + VL+QFEDFA  NA  +L +Y      FNDDIQ
Sbjct:   73 KHVYLRNLQDTNETLFYHLVVNHLTEMMPIIYTPVVGEACEHFSEIYRASRGLFISYPNKDRIDEMLRNVTKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQALLNDPLYMGWRQPRITGKEYEDFVDAFVQAVKRRWPD-VLLQFEDFAQKNASPILKRYRDEICSFNDDIQ 272          
BLAST of FC930352 vs. ExPASy Swiss-Prot
Match: MAO1_ALISL (NAD-dependent malic enzyme OS=Aliivibrio salmonicida (strain LFI1238) GN=sfcA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.180e-56
Identity = 107/229 (46.72%), Postives = 152/229 (66.38%), Query Frame = 2
Query:   23 KYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLF 709
            K++ +  +++ NE LFY+L+ +++ E++P++YTPTVG AC+ + +I+RR +GL+IS + K +I ++L N   ++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+  LPI +DVGTNN Q L D  Y+G R  R TG EY + ++EF+ AV++ +  + L+QFEDFA  NA  LL +Y      FNDDIQ                   +LA+ R  F
Sbjct:   70 KHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGNEYKDFVEEFIQAVQRRW-PQALVQFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLAQQRVTF 297          
The following BLAST results are available for this feature:
BLAST of FC930352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAO1_SHIB37.991e-5752.24NAD-dependent malic enzyme OS=Shigella boydii sero... [more]
MAO1_SHEFN1.044e-5651.74NAD-dependent malic enzyme OS=Shewanella frigidima... [more]
MAO1_SHEDO1.044e-5651.74NAD-dependent malic enzyme OS=Shewanella denitrifi... [more]
MAO1_VIBFM1.363e-5647.16NAD-dependent malic enzyme OS=Vibrio fischeri (str... [more]
MAO1_VIBF11.363e-5647.16NAD-dependent malic enzyme OS=Vibrio fischeri (str... [more]
MAO1_PROMH1.780e-5652.74NAD-dependent malic enzyme OS=Proteus mirabilis (s... [more]
MAO1_ENT381.780e-5651.74NAD-dependent malic enzyme OS=Enterobacter sp. (st... [more]
MAO1_PHOLL2.325e-5652.20NAD-dependent malic enzyme OS=Photorhabdus lumines... [more]
MAO1_BDEBA3.037e-5652.24NAD-dependent malic enzyme OS=Bdellovibrio bacteri... [more]
MAO1_ALISL5.180e-5646.72NAD-dependent malic enzyme OS=Aliivibrio salmonici... [more]

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Properties
Property NameValue
Genbank descriptionC34006F02EF PostHarvC1 Citrus clementina cDNA clone C34006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930352 ID=FC930352; Name=FC930352; organism=Citrus clementina; type=EST; length=711bp
AGAAATATGAAGTTCCGCTGCAAAATATGTGGCCATGATGGAACTTGAGG
AGAGAAATGAAAGACTGTTCTATAAGCTACTGATTGATAATGTTGAGGAA
CTTCTCCCAGTCGTTTACACTCCAACTGTTGGTGAAGCTTGCCAGAAATA
TGGAAGTATCTTCAGGCGTCCTCAGGGTCTATACATAAGTCTGAAAGAGA
AGGGAAAGATTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAG
GTTATTGTTGTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGG
CTGTCAGGGGATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCAC
TTGGAGGCATTCGTCCCTCAGCATGTTTGCCCATAACCGTTGATGTGGGT
ACAAACAATGAGCAATTGTTGAAGGATGAATTCTACATTGGTCTACGACA
GAGGAGGGCAACCGGACAGGAATATGCTGAACTTCTAGATGAATTCATGA
GTGCTGTCAAGCAAAATTATGGAGAAAAAGTTCTTATACAGTTTGAGGAT
TTCGCAAACCACAATGCTTTTGAGTTGCTTGCAAAATATGGCACAACTCA
TCTTGTCTTCAATGATGATATACAGGGTACAGCGTCTGTTGTTCTTGCTG
GGGTAGTTGCAGCACTGAAGTTGATTGGTGGCACACTGGCCGAGCATAGA
TTTTTGTTTCT
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