FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.201e-40
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQR YDQ+VHDV +QKLPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA +DEAEL HMVAT   IDDRPS  R+PRG G G
Sbjct:  382 LATEGYKPFCAIYSTFLQRAYDQIVHDVAIQKLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYPRGEGRG 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.201e-40
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQR YDQ+VHDV +QKLPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA +DEAEL HMVAT   IDDRPS  R+PRG G G
Sbjct:  382 LATEGYKPFCAIYSTFLQRAYDQIVHDVAIQKLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSAVRYPRGEGRG 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_PHEZH (1-deoxy-D-xylulose-5-phosphate synthase OS=Phenylobacterium zucineum (strain HLK1) GN=dxs PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.201e-40
Identity = 76/104 (73.08%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA++G+KPF AIYS+FLQRGYDQVVHDV +Q LPVRFA+DRAGLVGADGPTH G+FD+ FM  LP MVVM P+DEAEL   +ATA  IDDRPS FR+PRG G+G
Sbjct:  379 LAADGMKPFAAIYSTFLQRGYDQVVHDVAIQSLPVRFAIDRAGLVGADGPTHAGSFDVGFMGQLPGMVVMGPADEAELARAIATAVAIDDRPSAFRYPRGEGVG 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.201e-40
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FD  F+ CLPNMV+MA +DEAEL HMVAT   I+DRPS  R+PRG G G
Sbjct:  406 LATEGFKPFCAIYSTFLQRGYDQVVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAFLGCLPNMVIMAAADEAELVHMVATQVAINDRPSAVRYPRGEGRG 509          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.569e-40
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +ASEG++PFCAIYS+FLQR YDQVVHDV LQ LPVRFA+DRAGLVGADG TH GAFD+ ++ CLPNMVVMAPSDE EL H  ATA   D  P  FR+PRGNGIG
Sbjct:  398 IASEGLRPFCAIYSTFLQRAYDQVVHDVALQNLPVRFAIDRAGLVGADGATHAGAFDLNYLCCLPNMVVMAPSDEVELLHATATACEYDAGPIAFRYPRGNGIG 501          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_XANP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dxs PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.677e-40
Identity = 76/104 (73.08%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCA+YS+FLQR YDQVVHDV LQ LPVRF +DRAGLVGADG TH GAFDI F++CLP M VMAP+DEAEL HM+AT    DD PS  RFPRG G+G
Sbjct:  380 LAAEGFKPFCALYSTFLQRAYDQVVHDVALQGLPVRFIIDRAGLVGADGATHAGAFDIAFLACLPGMTVMAPADEAELVHMMATMVAFDDGPSAVRFPRGEGVG 483          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.677e-40
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQR YDQVVHDV LQ LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA SDEAEL HMVAT   I+DRPS  R+PRG G G
Sbjct:  379 LATEGYKPFCAIYSTFLQRAYDQVVHDVALQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAINDRPSALRYPRGEGRG 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.677e-40
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA SDEAEL HMVAT   I+DRPS  R+PRG G G
Sbjct:  382 LAAEGFKPFCAIYSTFLQRGYDQIVHDVCIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAINDRPSSVRYPRGEGRG 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.566e-40
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA+EG +PFCA+YS+FLQRGYDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FD++++  LPNMV+MA +DEAEL HMVATAA  D+ P  FR+PRG G+G  L
Sbjct:  382 LATEGYRPFCALYSTFLQRGYDQVVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDVSYLGILPNMVIMAAADEAELVHMVATAAAYDEGPIAFRYPRGEGVGIEL 488          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.963e-40
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPN V+MA SDEAEL HMVAT   I+DRPS  R+PRG G G
Sbjct:  379 LATEGFKPFCAIYSTFLQRGYDQIVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRG 482          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_RHOPT1.201e-4073.081-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA1.201e-4073.081-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_PHEZH1.201e-4073.081-deoxy-D-xylulose-5-phosphate synthase OS=Phenylo... [more]
DXS_NITWN1.201e-4074.041-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_GLUOX1.569e-4074.041-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS_XANP22.677e-4073.081-deoxy-D-xylulose-5-phosphate synthase OS=Xanthob... [more]
DXS_RHOPS2.677e-4074.041-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRASB2.677e-4073.081-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BEII94.566e-4069.161-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_RHOP25.963e-4072.121-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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