FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ANASK (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter sp. (strain K) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.683e-32
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG++P  AIYS+FLQR YDQ++HDV LQKLPV FA+DR GLVGADG TH GAFD+ ++ C+P +VVMAPSDE EL HM+ T ++  + P+  R+PRG G G  L
Sbjct:  378 LACEGIRPVVAIYSTFLQRAYDQIIHDVALQKLPVTFALDRGGLVGADGKTHQGAFDLAYLRCVPGLVVMAPSDENELRHMLHT-SLQHEGPAALRYPRGAGEGVAL 483          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.683e-32
Identity = 67/107 (62.62%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA E VKP  AIYS+FLQRGYDQ+VHDV LQ LPV FA+DRAGLVGADGPTH G+FD++++ C+PNM + APSDEAE   +++T     D P   R+PRG+G GA L
Sbjct:  380 LACESVKPVLAIYSTFLQRGYDQLVHDVALQNLPVLFAVDRAGLVGADGPTHHGSFDLSYLRCVPNMTIAAPSDEAECWRLLST-GYHHDGPFAVRYPRGSGPGAAL 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS1_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.683e-32
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA+EG +P  A+YSSFLQR YDQV HDV LQ LPV FA+DRAG+VG+DGPTH G FD+ ++  LPNMVVMAP DE EL H++ T A+  D P+  R+PRGNG G  L
Sbjct:  378 LAAEGYRPVFAVYSSFLQRAYDQVFHDVCLQNLPVTFAIDRAGVVGSDGPTHHGLFDLAYLRHLPNMVVMAPKDENELQHLLLT-AIEHDGPAAVRYPRGNGYGVSL 483          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SYNAS (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.504e-32
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA+EG+ P  AIYSSFLQR YDQ++HDV LQ LPV FA+DRAG VG DGPTH G FD++++  +PNMVVMAP DE EL HM+ T AV   +P+  R+PRG+G+G  +
Sbjct:  393 LATEGILPVVAIYSSFLQRAYDQILHDVCLQNLPVVFALDRAGFVGEDGPTHHGLFDLSYLRSIPNMVVMAPKDENELQHMLHT-AVACGKPAAVRYPRGSGVGVTM 498          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHESH (1-deoxy-D-xylulose-5-phosphate synthase OS=Shewanella sediminis (strain HAW-EB3) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.504e-32
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    4 ASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            A EG+KP  AIYS+FLQRGYDQ++HDV LQKLPV FA+DR G+VGADGPTH GAFD++FM  +PNMV+MAPSDE E   M+ T     + P+  R+PRG+  G
Sbjct:  381 ACEGLKPVVAIYSTFLQRGYDQLIHDVALQKLPVLFAIDRGGIVGADGPTHQGAFDLSFMRTVPNMVIMAPSDENECRQMLYTGYCYREGPTAVRYPRGSATG 483          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ANADE (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.504e-32
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG++P  AIYS+FLQR YDQ++HDV LQKLPV FA+DR GLVGADG TH GAFD+ ++ C+P +V+MAPSDE EL HM+ T ++  D P+  R+PRG G G  L
Sbjct:  378 LACEGIRPVVAIYSTFLQRAYDQIIHDVALQKLPVTFALDRGGLVGADGKTHQGAFDLAYLRCVPGLVLMAPSDENELRHMLHT-SLQHDGPAALRYPRGAGEGVPL 483          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THIDA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.576e-32
Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EGVKP  AIYS+FLQR YDQ++HD+ LQ LPV  A+DRAGLVGADGPTH G+FD++F+ C+P++V+ APSDE E   +++T A + D P+  R+PRG G GA +
Sbjct:  374 LACEGVKPVVAIYSTFLQRAYDQLIHDIALQNLPVTLAIDRAGLVGADGPTHAGSFDLSFLRCVPDLVIAAPSDENECRRLLST-AFLHDGPAAVRYPRGCGTGAAI 479          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MICAN (1-deoxy-D-xylulose-5-phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=dxs PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.576e-32
Identity = 61/107 (57.01%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG++P   IYS+FLQR +DQ++HD+ +Q LPV F MDRAG+VGADGPTH G +DI ++ C+PNM +MAP DEAEL  MV T       P   R+PRGNG+G  L
Sbjct:  380 LACEGMRPVVTIYSTFLQRAFDQIIHDICIQNLPVFFCMDRAGIVGADGPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMVVTGINHTSGPIAMRYPRGNGLGVPL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.977e-32
Identity = 62/107 (57.94%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            +A EG++P  AIYS+FLQR YDQ++HDV +QKLPV F +DRAG+VGADGPTH G +DI ++ C+P MV+MAP DEAEL  MV T       P   R+PRG G+G  L
Sbjct:  385 MACEGMRPVVAIYSTFLQRAYDQIIHDVCIQKLPVFFCLDRAGVVGADGPTHQGMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTKGPIAMRYPRGAGVGVPL 491          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SHISS (1-deoxy-D-xylulose-5-phosphate synthase OS=Shigella sonnei (strain Ss046) GN=dxs PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.977e-32
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA  G KP  AIYS+FLQR YDQV+HDV +QKLPV FA+DRAG+VGADG TH GAFD++++ C+P MV+M PSDE E   M+ T    +D PS  R+PRGN +G  L
Sbjct:  380 LAIGGYKPIVAIYSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVEL 486          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ANASK2.683e-3260.751-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_ALHEH2.683e-3262.621-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS1_GEOMG2.683e-3262.621-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geoba... [more]
DXS_SYNAS3.504e-3260.751-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_SHESH3.504e-3262.141-deoxy-D-xylulose-5-phosphate synthase OS=Shewane... [more]
DXS_ANADE3.504e-3260.751-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_THIDA4.576e-3258.881-deoxy-D-xylulose-5-phosphate synthase OS=Thiobac... [more]
DXS_MICAN4.576e-3257.011-deoxy-D-xylulose-5-phosphate synthase OS=Microcy... [more]
DXS_SYNJA5.977e-3257.941-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_SHISS5.977e-3259.811-deoxy-D-xylulose-5-phosphate synthase OS=Shigell... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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