FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.963e-40
Identity = 75/104 (72.12%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPN V+MA SDEAEL HMVAT   I+DRPS  R+PRG G G
Sbjct:  408 LATEGFKPFCAIYSTFLQRGYDQIVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRG 511          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SPHWW (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.017e-39
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA++G +PFCAIYS+FLQR YDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FDIT+++ LPNMVVMA +DEAEL HMV TAAV D  P   R+PRGNG+G  L
Sbjct:  381 LAAQGYRPFCAIYSTFLQRAYDQVVHDVAIQNLPVRFAIDRAGLVGADGSTHAGSFDITYLATLPNMVVMAAADEAELVHMVHTAAVHDSGPIALRYPRGNGVGVAL 487          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.017e-39
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA++G+KPFCAIYS+FLQRGYDQVVHDV +Q+LPVRFA+DRAGLVGADG TH G+FDI ++  LP  V MAPSDEAEL  MV T+  IDDRPS  R+PRG G+G V+
Sbjct:  379 LAADGMKPFCAIYSTFLQRGYDQVVHDVAIQQLPVRFAIDRAGLVGADGATHAGSFDIGYLGALPGFVCMAPSDEAELARMVLTSLEIDDRPSAVRYPRGEGVGVVI 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  L
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  L
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  L
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  L
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  L
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  L
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDL 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRUC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=dxs PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  L
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDL 486          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_NITHX5.963e-4072.121-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_SPHWW1.017e-3971.031-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_HYPNA1.017e-3970.091-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS_OCHA41.328e-3971.961-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]
DXS_BRUSU1.328e-3971.961-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI1.328e-3971.961-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUO21.328e-3971.961-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUME1.328e-3971.961-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB1.328e-3971.961-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUC21.328e-3971.961-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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