FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.048e-39
Identity = 75/104 (72.12%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA++G+KPF AIYS+FLQRGYDQVVHDV +QKLPVRFA+DRAGLVGADG TH G+FDI ++  LP MV+MA +DE EL+ MV TAA+IDD PS FR+PRGNG G
Sbjct:  379 LAADGMKPFAAIYSTFLQRGYDQVVHDVAIQKLPVRFAIDRAGLVGADGATHAGSFDIGYLGALPGMVLMAAADELELSRMVKTAALIDDGPSAFRYPRGNGTG 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.048e-39
Identity = 73/104 (70.19%), Postives = 90/104 (86.54%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+ G++PFCAIYS+FLQRGYDQ+VHDV +Q+LPVRFA+DRAGLVGADG TH G+FD+ F+S LP +VVMA +DEAEL HMVATAA  D+ P  FR+PRG+G+G
Sbjct:  381 LAAGGMRPFCAIYSTFLQRGYDQIVHDVAIQRLPVRFAIDRAGLVGADGATHAGSFDVAFLSNLPGIVVMAAADEAELVHMVATAAAHDEGPIAFRYPRGDGVG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS1_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.125e-38
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            +A+ G+KPFCAIYS+FLQRGYDQ+VHDV LQ LPVRFA+DRAGLVGADG TH G+FDI ++  LP MVVMA +DEAEL HMVATA   +D P  FR+PRGNG G  L
Sbjct:  383 MAATGLKPFCAIYSTFLQRGYDQIVHDVALQGLPVRFAIDRAGLVGADGATHAGSFDIGYLGALPGMVVMAAADEAELVHMVATAGAHNDGPIAFRYPRGNGTGVPL 489          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.469e-38
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+ G+KPFCA+YS+FLQRGYDQVVHDV +Q+LPVRFA+DRAGLVGADG TH G+FDI FM+ LP MVVMA +DEAEL HMVATAA  D  P  FR+PRG G G
Sbjct:  385 LAAGGMKPFCAMYSTFLQRGYDQVVHDVAIQRLPVRFAIDRAGLVGADGATHAGSFDIAFMANLPGMVVMAAADEAELKHMVATAAAYDAGPIAFRYPRGEGEG 488          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_AGRT5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.469e-38
Identity = 72/104 (69.23%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA++G KPFCA+YS+FLQRGYDQ+VHDV +Q LPVRF +DRAG VGADGPTH G+FD TF++ LP MVVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G
Sbjct:  381 LAADGYKPFCALYSTFLQRGYDQLVHDVAIQSLPVRFPIDRAGFVGADGPTHAGSFDTTFLATLPGMVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.505e-38
Identity = 71/104 (68.27%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG+KPFCAIYS+FLQR YDQVVHDV +Q LPVRFA+DRAGLVG+DG TH G+FD+ ++ C+PN+V+MA +DEAEL HMVATAA  D  P   R+PRG G+G
Sbjct:  382 LAAEGLKPFCAIYSTFLQRAYDQVVHDVCIQNLPVRFAIDRAGLVGSDGCTHAGSFDVAYLGCVPNIVIMAAADEAELKHMVATAAAYDHGPIAVRYPRGEGVG 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.505e-38
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A+ G+KPF AIYS+FLQRGYDQVVHDV +Q+LPVRFA+DRAGLVGADG TH G++DI++++ LP  VVMA +DEAEL HMV TA  IDDRPS FRFPRG G+G
Sbjct:  383 MAAGGLKPFAAIYSTFLQRGYDQVVHDVAIQRLPVRFAIDRAGLVGADGCTHAGSYDISYLANLPGFVVMAAADEAELRHMVRTALEIDDRPSAFRFPRGEGMG 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.581e-38
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA+EG +PF AIYS+FLQR YDQVVHDV +Q LPVRFA+DRAG VGADG THCGAFD+ +++ LPNMVVMA +DEAEL HMV TAA  D+ P  FR+PRG G G  L
Sbjct:  394 LATEGYRPFAAIYSTFLQRAYDQVVHDVAIQNLPVRFAIDRAGFVGADGATHCGAFDVAYLATLPNMVVMAAADEAELKHMVRTAADHDEGPIAFRYPRGEGTGVPL 500          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.581e-38
Identity = 73/104 (70.19%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A EG KPF AIYS+FLQR YDQ++HDV +QKLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE EL HMV TAAV D  P  FR+PRG GIG
Sbjct:  381 IACEGYKPFVAIYSTFLQRAYDQIIHDVSIQKLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPEFVVMAPSDEVELMHMVRTAAVYDQGPISFRYPRGEGIG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.289e-38
Identity = 74/104 (71.15%), Postives = 86/104 (82.69%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+ G+KPFCA+YS+FLQRGYDQVVHDV +Q+LPVRFA+DRAGLVGADG TH G+FDI +++ LP  VVMA +DEAEL HMVATA   DD P  FRFPRG G G
Sbjct:  385 LAAGGMKPFCAMYSTFLQRGYDQVVHDVAIQRLPVRFAIDRAGLVGADGATHAGSFDIAYLANLPGFVVMAAADEAELKHMVATAVAHDDGPIAFRFPRGEGNG 488          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_MARMM5.048e-3972.121-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS2_RHOS45.048e-3970.191-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_ROSDO1.125e-3870.091-deoxy-D-xylulose-5-phosphate synthase 1 OS=Roseo... [more]
DXS_SILST1.469e-3873.081-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_AGRT51.469e-3869.231-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_RHOCS2.505e-3868.271-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS1_JANSC2.505e-3871.151-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS_MESSB5.581e-3869.161-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_BARBK5.581e-3870.191-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS2_ROSDO7.289e-3871.151-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
back to top