FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THETN (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermoanaerobacter tengcongensis GN=dxs PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.789e-27
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA EG KP+ A+YS+FLQR YDQV+HDV +QKLPV FA+DRAG+VG DG TH G FDI+F+  +PN+ +M+P D  EL  MV  +  + D P   R+PRG
Sbjct:  373 LAVEGYKPYFAVYSTFLQRAYDQVIHDVCIQKLPVVFAVDRAGIVGEDGETHQGVFDISFLRAIPNIAIMSPKDANELVEMVKLSRNL-DFPVAIRYPRG 471          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BUCAI (1-deoxy-D-xylulose-5-phosphate synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dxs PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.789e-27
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA  G KP  +IYS+F QR YDQ++HD+ LQKL V FA+DRAG+VG DG TH G FD+ ++ C+P +V+M PS+E E   M+ T  + +  PS  R+P+G G+G +L
Sbjct:  367 LAISGYKPVVSIYSTFFQRAYDQLIHDIALQKLSVLFAVDRAGIVGNDGQTHQGVFDLAYLRCIPGIVIMTPSNENECRQMLYTGYMHNKGPSVVRYPKGYGVGELL 473          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SYMTH (1-deoxy-D-xylulose-5-phosphate synthase OS=Symbiobacterium thermophilum GN=dxs PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.561e-27
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA  G++P  A+YS+FLQR YDQV+HDV LQ LPV  A+DR GLV  DG TH G FD+ ++  +PNMVVMAP DE EL HM+ T A+  D P+  R+PRG   G  L
Sbjct:  373 LAKGGMRPVFAVYSTFLQRAYDQVIHDVALQNLPVTLAIDRGGLV-EDGATHQGVFDVAYLRAIPNMVVMAPKDENELQHMLYT-ALCHDGPAALRYPRGKAQGVPL 477          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BACV8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxs PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.561e-27
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNG 306
            +A +G+ PFC IYSSF+QR YD V+HD+ +QKL V   +DRAGLVG DGPTH GAFD+ +M  +PN++V +P +E EL  ++ TA + D  P   R+PRG G
Sbjct:  387 MAKDGLLPFCNIYSSFMQRAYDNVIHDIAIQKLNVVLCLDRAGLVGEDGPTHHGAFDLAYMRPIPNLIVASPYNEHELRCLMYTAQLPDKGPFVIRYPRGRG 488          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SULDN (1-deoxy-D-xylulose-5-phosphate synthase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=dxs PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.874e-27
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA EG KPFC IYS+FLQRGYDQV+HD  L  LPV FA+DRAG+VG DG TH G FD++F+  +PNM + AP DE      +A AA     P   R+PRG+
Sbjct:  364 LAKEGFKPFCTIYSTFLQRGYDQVIHDTCLMNLPVVFALDRAGIVGEDGETHQGVFDVSFLRAIPNMTLFAPRDEKSFHQAMAFAAQY-QFPCSLRYPRGS 463          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_DICT6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dxs PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.290e-26
Identity = 54/104 (51.92%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA  G+KP  AIYS+FLQR +DQ++HDV LQKLP+ F +DRAG+V  DGPTH G FD++++  +PNMV+ AP DE+EL  ++ T A+    P   R+P+  G+G
Sbjct:  369 LAKNGLKPVVAIYSTFLQRAFDQIIHDVCLQKLPIVFVLDRAGIVSDDGPTHQGIFDLSYLRLIPNMVISAPKDESELRDLLYT-AINYPGPFAIRYPKSKGVG 471          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ALCBS (1-deoxy-D-xylulose-5-phosphate synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.684e-26
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA E  KP  AIYS+FLQRGYDQ++HDV LQ+L V F +DRAGLVG DG TH G FD+ ++  +PNM++ APSDE E   ++  +A   + P+  R+PRG G GA +
Sbjct:  394 LACENQKPVVAIYSTFLQRGYDQLIHDVALQELDVTFGLDRAGLVGEDGATHGGVFDLAYLRTVPNMIIAAPSDENECRQLL-YSAYQHEGPAAVRYPRGTGPGATI 499          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_PORGI (1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis GN=dxs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            LA EG+ PFC IYSSF+QRGYDQV+HDV L    V   +DRAGLVG DG TH G FD+ F+ C+P++VV +P +E EL +++ TA    D P   R+PRG G+
Sbjct:  386 LAKEGLIPFCNIYSSFIQRGYDQVIHDVALSGSHVVICLDRAGLVGEDGATHHGVFDMAFLRCVPDIVVASPLNEHELRNLMLTAYKGYDGPMVIRYPRGKGV 488          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_PORG3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            LA EG+ PFC IYSSF+QRGYDQV+HDV L    V   +DRAGLVG DG TH G FD+ F+ C+P++VV +P +E EL +++ TA    D P   R+PRG G+
Sbjct:  386 LAKEGLIPFCNIYSSFIQRGYDQVIHDVALSGSHVVICLDRAGLVGEDGATHHGVFDMAFLRCVPDIVVASPLNEHELRNLMLTAYKGYDGPMVIRYPRGKGV 488          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_NITSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitratiruptor sp. (strain SB155-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            LA EG KPF AIYS+FLQRGYDQV+HD+ L  + V FA+DRAG+VG DG TH GAFD++++  +PNM + AP D   L + V  A    DRP  FR+PRG+ I
Sbjct:  362 LAKEGFKPFVAIYSTFLQRGYDQVIHDIALMDVGVAFAIDRAGIVGEDGETHQGAFDVSYLRPIPNMHLFAPRDPKTLEYAVEFAKDF-DRPCAFRYPRGSFI 463          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_THETN5.789e-2757.001-deoxy-D-xylulose-5-phosphate synthase OS=Thermoa... [more]
DXS_BUCAI5.789e-2750.471-deoxy-D-xylulose-5-phosphate synthase OS=Buchner... [more]
DXS_SYMTH7.561e-2756.071-deoxy-D-xylulose-5-phosphate synthase OS=Symbiob... [more]
DXS_BACV87.561e-2752.941-deoxy-D-xylulose-5-phosphate synthase OS=Bactero... [more]
DXS_SULDN9.874e-2756.441-deoxy-D-xylulose-5-phosphate synthase OS=Sulfuri... [more]
DXS_DICT61.290e-2651.921-deoxy-D-xylulose-5-phosphate synthase OS=Dictyog... [more]
DXS_ALCBS1.684e-2653.271-deoxy-D-xylulose-5-phosphate synthase OS=Alcaniv... [more]
DXS_PORGI2.873e-2654.371-deoxy-D-xylulose-5-phosphate synthase OS=Porphyr... [more]
DXS_PORG32.873e-2654.371-deoxy-D-xylulose-5-phosphate synthase OS=Porphyr... [more]
DXS_NITSB2.873e-2656.311-deoxy-D-xylulose-5-phosphate synthase OS=Nitrati... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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