FC930356
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BLOFL (1-deoxy-D-xylulose-5-phosphate synthase OS=Blochmannia floridanus GN=dxs PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26 Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321 LA G KP AIYS+FLQR YDQ++HD+ +QKLPV FA+DR G+VG+DG TH GAFD++++ C+PN+++M PS+ E M+ T PS R+P+G +L Sbjct: 370 LAIAGYKPVVAIYSTFLQRAYDQIIHDIAIQKLPVLFAVDRGGIVGSDGETHQGAFDLSYLRCIPNLIIMTPSNAYECKLMLHTGYHYQYGPSVVRYPKGCATNNIL 476
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ALKOO (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxs PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26 Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 LA+ G KPF A+YS+F QR YDQV+HD +Q LPV + +DRAGLVG DG TH G+ DI+F+SC+PN+ MAP D EL+ MV AA + P R+PRG+ Sbjct: 377 LAANGFKPFFAVYSTFFQRAYDQVIHDACIQDLPVTYLIDRAGLVGNDGETHHGSLDISFLSCIPNLTFMAPKDGIELSEMVRFAAK-HNGPVAIRYPRGH 476
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CARHZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxs PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 6.400e-26 Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321 +A EG+KP AIYS+FLQR +DQ++HDV LQ LPV FA+DRAG+VG DGPTH G FD++++ +PN+ +M P +E L M+ T A+ P R+PRG +G L Sbjct: 376 MACEGLKPVVAIYSTFLQRSFDQIIHDVCLQNLPVVFAVDRAGIVGEDGPTHHGIFDLSYLRMIPNLTIMVPRNEDMLRKMLFT-ALNHSGPVALRYPRGAAVGVEL 481
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOK5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dxs PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25 Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300 +A EG+KP A+YS+FLQR YDQ++HD+ +QKLPV FA+DRAG+VG DG TH G FD+++++ +PNM VM+P AELTHM+ A+ + P R+PRG Sbjct: 376 MAVEGLKPVFAVYSTFLQRSYDQLLHDICIQKLPVVFAVDRAGIVGDDGETHQGIFDLSYLTEMPNMTVMSPKCMAELTHMLKW-ALNQNCPIAIRYPRG 474
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOK1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=dxs PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25 Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300 +A EG+KP A+YS+FLQR YDQ++HD+ +QKLPV FA+DRAG+VG DG TH G FD+++++ +PNM VM+P AELTHM+ A+ + P R+PRG Sbjct: 376 MAVEGLKPVFAVYSTFLQRSYDQLLHDICIQKLPVVFAVDRAGIVGDDGETHQGIFDLSYLTEMPNMTVMSPKCMAELTHMLKW-ALNQNCPIAIRYPRG 474
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAMJD (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dxs PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25 Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309 +A EG KPF AIYS+FLQR YDQV+HD + L V FAMDRAG+VG DG TH G FD++F++ LPN ++AP DE ++ H + A + P FR+PRG+ I Sbjct: 370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMHNIMEYAYLHQGPIAFRYPRGSFI 471
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ARCB4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Arcobacter butzleri (strain RM4018) GN=dxs PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25 Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300 +A EG KPF IYS+FLQRG+DQ++HDV L LPV FAMDRAG+VG DG TH GAFDI+F+ +PNMV+ AP D L + A +++ P R+PRG Sbjct: 363 MAKEGFKPFITIYSTFLQRGFDQIIHDVCLMNLPVVFAMDRAGIVGNDGETHQGAFDISFLRFIPNMVLFAPRDNETLEQSLEFAYNLNN-PCAIRYPRG 461
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAMFF (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dxs PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.426e-25 Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309 +A EG KP+ AIYS+F+QR YDQV+HD + +LPV F MDRAG+VG DG TH GAFDI+F++ +PN+ ++AP DE +++ + D P R+PRGN I Sbjct: 362 MAKEGFKPYIAIYSTFMQRAYDQVIHDCAIMRLPVVFCMDRAGIVGEDGETHQGAFDISFLNAIPNLNLVAPRDEESFKNIMEFSYAFDS-PLAIRYPRGNFI 463
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium acetobutylicum GN=dxs PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25 Identity = 59/108 (54.63%), Postives = 76/108 (70.37%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPR-GNGIGAVL 321 LA+ G KP A+YS+FLQR YDQV+HDV +QKLPV FA+DRAG+VG DG TH G FDI+++S +PNM +MAP EL + + AV + P R+P+ GN I VL Sbjct: 375 LAATGYKPVFAVYSTFLQRAYDQVLHDVCIQKLPVVFAIDRAGIVGEDGETHQGVFDISYLSSIPNMTIMAPKCVEELNY-IMNWAVKQNYPIAVRYPKGGNDISDVL 481
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOD6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium difficile (strain 630) GN=dxs PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.149e-25 Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 LA G+KP+ A+YSSFLQR YDQV+HDV + K PV F +DRAGLVG DG TH G FD+++++ +PN+VVMAP D E+ M+ + + D P R+PRG+ Sbjct: 376 LAKNGMKPYFAVYSSFLQRAYDQVIHDVCITKKPVTFLIDRAGLVGNDGETHHGMFDLSYLNSIPNIVVMAPKDTREMELMMDLSLKL-DCPLAIRYPRGS 475 The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bpback to top |