FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BLOFL (1-deoxy-D-xylulose-5-phosphate synthase OS=Blochmannia floridanus GN=dxs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26
Identity = 53/107 (49.53%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA  G KP  AIYS+FLQR YDQ++HD+ +QKLPV FA+DR G+VG+DG TH GAFD++++ C+PN+++M PS+  E   M+ T       PS  R+P+G     +L
Sbjct:  370 LAIAGYKPVVAIYSTFLQRAYDQIIHDIAIQKLPVLFAVDRGGIVGSDGETHQGAFDLSYLRCIPNLIIMTPSNAYECKLMLHTGYHYQYGPSVVRYPKGCATNNIL 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ALKOO (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxs PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.873e-26
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA+ G KPF A+YS+F QR YDQV+HD  +Q LPV + +DRAGLVG DG TH G+ DI+F+SC+PN+  MAP D  EL+ MV  AA   + P   R+PRG+
Sbjct:  377 LAANGFKPFFAVYSTFFQRAYDQVIHDACIQDLPVTYLIDRAGLVGNDGETHHGSLDISFLSCIPNLTFMAPKDGIELSEMVRFAAK-HNGPVAIRYPRGH 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CARHZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.400e-26
Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            +A EG+KP  AIYS+FLQR +DQ++HDV LQ LPV FA+DRAG+VG DGPTH G FD++++  +PN+ +M P +E  L  M+ T A+    P   R+PRG  +G  L
Sbjct:  376 MACEGLKPVVAIYSTFLQRSFDQIIHDVCLQNLPVVFAVDRAGIVGEDGPTHHGIFDLSYLRMIPNLTIMVPRNEDMLRKMLFT-ALNHSGPVALRYPRGAAVGVEL 481          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOK5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25
Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            +A EG+KP  A+YS+FLQR YDQ++HD+ +QKLPV FA+DRAG+VG DG TH G FD+++++ +PNM VM+P   AELTHM+   A+  + P   R+PRG
Sbjct:  376 MAVEGLKPVFAVYSTFLQRSYDQLLHDICIQKLPVVFAVDRAGIVGDDGETHQGIFDLSYLTEMPNMTVMSPKCMAELTHMLKW-ALNQNCPIAIRYPRG 474          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOK1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25
Identity = 55/100 (55.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            +A EG+KP  A+YS+FLQR YDQ++HD+ +QKLPV FA+DRAG+VG DG TH G FD+++++ +PNM VM+P   AELTHM+   A+  + P   R+PRG
Sbjct:  376 MAVEGLKPVFAVYSTFLQRSYDQLLHDICIQKLPVVFAVDRAGIVGDDGETHQGIFDLSYLTEMPNMTVMSPKCMAELTHMLKW-ALNQNCPIAIRYPRG 474          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAMJD (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++ H +   A +   P  FR+PRG+ I
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMHNIMEYAYLHQGPIAFRYPRGSFI 471          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ARCB4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Arcobacter butzleri (strain RM4018) GN=dxs PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            +A EG KPF  IYS+FLQRG+DQ++HDV L  LPV FAMDRAG+VG DG TH GAFDI+F+  +PNMV+ AP D   L   +  A  +++ P   R+PRG
Sbjct:  363 MAKEGFKPFITIYSTFLQRGFDQIIHDVCLMNLPVVFAMDRAGIVGNDGETHQGAFDISFLRFIPNMVLFAPRDNETLEQSLEFAYNLNN-PCAIRYPRG 461          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAMFF (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dxs PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.426e-25
Identity = 53/103 (51.46%), Postives = 73/103 (70.87%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            +A EG KP+ AIYS+F+QR YDQV+HD  + +LPV F MDRAG+VG DG TH GAFDI+F++ +PN+ ++AP DE    +++  +   D  P   R+PRGN I
Sbjct:  362 MAKEGFKPYIAIYSTFMQRAYDQVIHDCAIMRLPVVFCMDRAGIVGEDGETHQGAFDISFLNAIPNLNLVAPRDEESFKNIMEFSYAFDS-PLAIRYPRGNFI 463          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium acetobutylicum GN=dxs PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25
Identity = 59/108 (54.63%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPR-GNGIGAVL 321
            LA+ G KP  A+YS+FLQR YDQV+HDV +QKLPV FA+DRAG+VG DG TH G FDI+++S +PNM +MAP    EL + +   AV  + P   R+P+ GN I  VL
Sbjct:  375 LAATGYKPVFAVYSTFLQRAYDQVLHDVCIQKLPVVFAIDRAGIVGEDGETHQGVFDISYLSSIPNMTIMAPKCVEELNY-IMNWAVKQNYPIAVRYPKGGNDISDVL 481          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOD6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium difficile (strain 630) GN=dxs PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.149e-25
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+KP+ A+YSSFLQR YDQV+HDV + K PV F +DRAGLVG DG TH G FD+++++ +PN+VVMAP D  E+  M+  +  + D P   R+PRG+
Sbjct:  376 LAKNGMKPYFAVYSSFLQRAYDQVIHDVCITKKPVTFLIDRAGLVGNDGETHHGMFDLSYLNSIPNIVVMAPKDTREMELMMDLSLKL-DCPLAIRYPRGS 475          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_BLOFL2.873e-2649.531-deoxy-D-xylulose-5-phosphate synthase OS=Blochma... [more]
DXS_ALKOO2.873e-2655.451-deoxy-D-xylulose-5-phosphate synthase OS=Alkalip... [more]
DXS_CARHZ6.400e-2651.401-deoxy-D-xylulose-5-phosphate synthase OS=Carboxy... [more]
DXS_CLOK51.092e-2555.001-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOK11.092e-2555.001-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CAMJD1.092e-2553.401-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_ARCB41.092e-2556.001-deoxy-D-xylulose-5-phosphate synthase OS=Arcobac... [more]
DXS_CAMFF1.426e-2551.461-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_CLOAB3.176e-2554.631-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOD64.149e-2553.471-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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