FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_PARD8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.418e-25
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNG 306
            LA EG+ PFC +YSSF+QR YD V+HDV LQKL +   +DRAGLVG DG TH G FD+ ++  +PN+V+ +P +E +L +++ T     D P   R+PRG G
Sbjct:  387 LAKEGMIPFCNVYSSFMQRAYDMVIHDVALQKLHMVICLDRAGLVGEDGATHHGVFDLAYLRPIPNLVIASPLNELDLRNLMYTGYAAFDGPFVIRYPRGKG 488          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_HELPY (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori GN=dxs PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.418e-25
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGS 470          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_HELPH (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain HPAG1) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.418e-25
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGS 470          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_HELPG (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori (strain G27) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.418e-25
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVRFANEHDSSPCAFRYPRGS 470          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_HELPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Helicobacter pylori J99 GN=dxs PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.076e-25
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            +A EG KPF +IYS+FLQR YD +VHD  +  LP++ A+DRAG+VG DG TH G  D++++  +PNMV+ AP D   L + V  A   D  P  FR+PRG+
Sbjct:  370 MAKEGFKPFVSIYSTFLQRAYDSIVHDACISSLPIKLAIDRAGIVGEDGETHQGLLDVSYLRSIPNMVIFAPRDNETLKNAVYFANEHDSSPCAFRYPRGS 470          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_DESHY (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain Y51) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.076e-25
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA  G+KP  +IYS+F QR YDQV+HDV L    V  A+DRAG+VG DGPTH G FDI+F+  +PN+V MAP DE EL HM+ T+  +D  P   R+PR  G G  L
Sbjct:  376 LAFGGMKPVVSIYSTFYQRAYDQVLHDVCLPHANVVMAIDRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDG-PVALRYPRSVGQGVEL 481          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_DESHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.076e-25
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA  G+KP  +IYS+F QR YDQV+HDV L    V  A+DRAG+VG DGPTH G FDI+F+  +PN+V MAP DE EL HM+ T+  +D  P   R+PR  G G  L
Sbjct:  376 LAFGGMKPVVSIYSTFYQRAYDQVLHDVCLPHANVVMAIDRAGVVGDDGPTHHGVFDISFLRVIPNLVFMAPKDENELRHMLYTSLQLDG-PVALRYPRSVGQGVEL 481          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOPE (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens GN=dxs PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            +A+EG+KPF A+YS+FLQR YDQV+HDV +QKLPV   +DRAGLVG DG TH G FDI+F+S +PNM ++AP    E+  ++  A+   + P   R+PRG  I
Sbjct:  375 MAAEGLKPFFAVYSTFLQRAYDQVLHDVCIQKLPVTLCLDRAGLVGEDGETHQGIFDISFLSPMPNMTIVAPKCIDEMEVILKWASNF-NAPLAIRYPRGGDI 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            +A+EG+KPF A+YS+FLQR YDQV+HDV +QKLPV   +DRAGLVG DG TH G FDI+F+S +PNM ++AP    E+  ++  A+   + P   R+PRG  I
Sbjct:  375 MAAEGLKPFFAVYSTFLQRAYDQVLHDVCIQKLPVTLCLDRAGLVGEDGETHQGIFDISFLSPMPNMTIVAPKCIDEMEVILKWASNF-NAPLAIRYPRGGDI 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAMJR (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni (strain RM1221) GN=dxs PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.242e-25
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++   +   A +   P  FR+PRG+ I
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIAFRYPRGSFI 471          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_PARD85.418e-2550.001-deoxy-D-xylulose-5-phosphate synthase OS=Parabac... [more]
DXS_HELPY5.418e-2549.501-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_HELPH5.418e-2549.501-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_HELPG5.418e-2549.501-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_HELPJ7.076e-2549.501-deoxy-D-xylulose-5-phosphate synthase OS=Helicob... [more]
DXS_DESHY7.076e-2554.211-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_DESHD7.076e-2554.211-deoxy-D-xylulose-5-phosphate synthase OS=Desulfi... [more]
DXS_CLOPE9.242e-2553.401-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CLOP19.242e-2553.401-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CAMJR9.242e-2552.431-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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