FC930356
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAMJE (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni GN=dxs PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24 Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309 +A EG KPF AIYS+FLQR YDQV+HD + L V FAMDRAG+VG DG TH G FD++F++ LPN ++AP DE ++ + A + P R+PRG+ I Sbjct: 370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIALRYPRGSFI 471
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium tetani GN=dxs PE=3 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 2.276e-23 Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300 +A+ G++P ++YS+FLQR YDQV+HDV +Q LPV FA+DRAGLVG DG TH G FD++++S +PNM +MAP EL M+ A+ + P R+P+G Sbjct: 376 MATAGLRPVFSVYSTFLQRAYDQVLHDVCIQNLPVVFAIDRAGLVGEDGETHQGVFDMSYLSHMPNMTIMAPKCVEELEFML-NWALSQESPIAIRYPKG 474
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THEMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga maritima GN=dxs PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.883e-23 Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318 L G+KP AIYS+FLQR YDQ++HDV LQ PV FA+DR+G+VG DGPTH G FDI ++ +PNM +++PS E + + T D P R+P+ + G V Sbjct: 360 LGLHGMKPVVAIYSTFLQRAYDQIIHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDINYLLPVPNMKIISPSSPEEFVNSLYTVLKHLDGPVAIRYPKESFYGEV 465
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THESQ (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga sp. (strain RQ2) GN=dxs PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 8.650e-23 Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318 L G+KP AIYS+FLQR YDQ++HDV LQ PV FA+DR+G+VG DGPTH G FD+ ++ +PNM +++PS E + T D P R+P+ + G V Sbjct: 360 LGLHGMKPVVAIYSTFLQRAYDQIIHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDMNYLLSVPNMKIISPSSPEEFVSSLYTVLKHLDGPVAIRYPKESFYGEV 465
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TREDE (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema denticola GN=dxs PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.130e-22 Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 LAS G+KP AIYS+FLQR DQ++HD +Q LPV FA+DRAG V ADG TH G FDI + +PNM ++ P+ E EL M++ A++ D P R+P+ + Sbjct: 378 LASAGMKPVTAIYSTFLQRSIDQIIHDTSIQNLPVIFAIDRAGPVPADGETHQGLFDIALLRPVPNMTILCPASEKELELMLSW-ALMQDNPIAIRYPKAD 477
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_DEIRA (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus radiodurans GN=dxs PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.130e-22 Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 +A +G++P AIYS+FLQR YDQV+HDV ++ L V F +DRAG+VGADG TH G FD++F+ +P + + P D AEL M+ A D P R+PRGN Sbjct: 383 MALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFAIRYPRGN 482
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dxs PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.476e-22 Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318 L G+KP AIYS+FLQR YDQ+VHDV LQ PV FA+D++G+VG DGPTH G FDI ++ +PNM +++PS E + T D P R+P+ + G V Sbjct: 360 LGLHGMKPVVAIYSTFLQRAYDQIVHDVALQNAPVLFAIDKSGVVGEDGPTHHGLFDINYLLPVPNMKIISPSSPEEFVSSLYTILKNLDGPVAIRYPKESFYGEV 465
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_DEIGD (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=dxs PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 4.293e-22 Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 +A +G++P AIYS+FLQR YDQV+HDV ++ L V FA+DR G+VGADG TH G FD++++ +PN+ + P D AEL M+ A P R+PRGN Sbjct: 387 MALQGMRPIVAIYSTFLQRAYDQVLHDVAIENLNVTFAIDRGGIVGADGATHNGVFDLSYLRSIPNVGIGLPKDAAELRGMLKYAQE-HAGPFAIRYPRGN 486
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYXXD (1-deoxy-D-xylulose-5-phosphate synthase OS=Myxococcus xanthus (strain DK 1622) GN=dxs PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22 Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG------NGIGA 315 LAS G +P C IYS+FLQR YDQ++HDV L LPV FA+DRAGLVGADG TH G +D+ + LP++ + +P +L M+ T A+ S RFPRG G+GA Sbjct: 337 LASAGARPVCCIYSTFLQRAYDQIIHDVCLPGLPVVFAVDRAGLVGADGATHQGTYDVASLRPLPDLHLWSPMVGEDLAPMLDT-ALAAPHASVIRFPRGTLPPLPEGLGA 446
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopirellula baltica GN=dxs PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.131e-21 Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1 Query: 13 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315 G++P IYS+FLQR YDQ+ +V LQ LPV F MDRAGL DGPTH G +DI +M PN+V+MAP EL+ M+ A + D PS R+P+ + + A Sbjct: 388 GMRPIVDIYSTFLQRSYDQIFQEVALQDLPVVFMMDRAGLTAPDGPTHHGVYDIGYMRLFPNLVLMAPGYAEELSMMLDKALTL-DHPSGIRYPKASALEA 487 The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bpback to top |