FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAMJE (1-deoxy-D-xylulose-5-phosphate synthase OS=Campylobacter jejuni GN=dxs PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.587e-24
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGI 309
            +A EG KPF AIYS+FLQR YDQV+HD  +  L V FAMDRAG+VG DG TH G FD++F++ LPN  ++AP DE ++   +   A +   P   R+PRG+ I
Sbjct:  370 MAKEGFKPFIAIYSTFLQRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE-QMMQNIMEYAYLHQGPIALRYPRGSFI 471          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CLOTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium tetani GN=dxs PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.276e-23
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            +A+ G++P  ++YS+FLQR YDQV+HDV +Q LPV FA+DRAGLVG DG TH G FD++++S +PNM +MAP    EL  M+   A+  + P   R+P+G
Sbjct:  376 MATAGLRPVFSVYSTFLQRAYDQVLHDVCIQNLPVVFAIDRAGLVGEDGETHQGVFDMSYLSHMPNMTIMAPKCVEELEFML-NWALSQESPIAIRYPKG 474          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THEMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga maritima GN=dxs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.883e-23
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318
            L   G+KP  AIYS+FLQR YDQ++HDV LQ  PV FA+DR+G+VG DGPTH G FDI ++  +PNM +++PS   E  + + T     D P   R+P+ +  G V
Sbjct:  360 LGLHGMKPVVAIYSTFLQRAYDQIIHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDINYLLPVPNMKIISPSSPEEFVNSLYTVLKHLDGPVAIRYPKESFYGEV 465          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THESQ (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga sp. (strain RQ2) GN=dxs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.650e-23
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318
            L   G+KP  AIYS+FLQR YDQ++HDV LQ  PV FA+DR+G+VG DGPTH G FD+ ++  +PNM +++PS   E    + T     D P   R+P+ +  G V
Sbjct:  360 LGLHGMKPVVAIYSTFLQRAYDQIIHDVALQNAPVLFAIDRSGVVGEDGPTHHGLFDMNYLLSVPNMKIISPSSPEEFVSSLYTVLKHLDGPVAIRYPKESFYGEV 465          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TREDE (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema denticola GN=dxs PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.130e-22
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LAS G+KP  AIYS+FLQR  DQ++HD  +Q LPV FA+DRAG V ADG TH G FDI  +  +PNM ++ P+ E EL  M++  A++ D P   R+P+ +
Sbjct:  378 LASAGMKPVTAIYSTFLQRSIDQIIHDTSIQNLPVIFAIDRAGPVPADGETHQGLFDIALLRPVPNMTILCPASEKELELMLSW-ALMQDNPIAIRYPKAD 477          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_DEIRA (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus radiodurans GN=dxs PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.130e-22
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            +A +G++P  AIYS+FLQR YDQV+HDV ++ L V F +DRAG+VGADG TH G FD++F+  +P + +  P D AEL  M+  A    D P   R+PRGN
Sbjct:  383 MALQGMRPVVAIYSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQT-HDGPFAIRYPRGN 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THEP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dxs PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.476e-22
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318
            L   G+KP  AIYS+FLQR YDQ+VHDV LQ  PV FA+D++G+VG DGPTH G FDI ++  +PNM +++PS   E    + T     D P   R+P+ +  G V
Sbjct:  360 LGLHGMKPVVAIYSTFLQRAYDQIVHDVALQNAPVLFAIDKSGVVGEDGPTHHGLFDINYLLPVPNMKIISPSSPEEFVSSLYTILKNLDGPVAIRYPKESFYGEV 465          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_DEIGD (1-deoxy-D-xylulose-5-phosphate synthase OS=Deinococcus geothermalis (strain DSM 11300) GN=dxs PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.293e-22
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            +A +G++P  AIYS+FLQR YDQV+HDV ++ L V FA+DR G+VGADG TH G FD++++  +PN+ +  P D AEL  M+  A      P   R+PRGN
Sbjct:  387 MALQGMRPIVAIYSTFLQRAYDQVLHDVAIENLNVTFAIDRGGIVGADGATHNGVFDLSYLRSIPNVGIGLPKDAAELRGMLKYAQE-HAGPFAIRYPRGN 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYXXD (1-deoxy-D-xylulose-5-phosphate synthase OS=Myxococcus xanthus (strain DK 1622) GN=dxs PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22
Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG------NGIGA 315
            LAS G +P C IYS+FLQR YDQ++HDV L  LPV FA+DRAGLVGADG TH G +D+  +  LP++ + +P    +L  M+ T A+     S  RFPRG       G+GA
Sbjct:  337 LASAGARPVCCIYSTFLQRAYDQIIHDVCLPGLPVVFAVDRAGLVGADGATHQGTYDVASLRPLPDLHLWSPMVGEDLAPMLDT-ALAAPHASVIRFPRGTLPPLPEGLGA 446          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOBA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopirellula baltica GN=dxs PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.131e-21
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   13 GVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            G++P   IYS+FLQR YDQ+  +V LQ LPV F MDRAGL   DGPTH G +DI +M   PN+V+MAP    EL+ M+  A  + D PS  R+P+ + + A
Sbjct:  388 GMRPIVDIYSTFLQRSYDQIFQEVALQDLPVVFMMDRAGLTAPDGPTHHGVYDIGYMRLFPNLVLMAPGYAEELSMMLDKALTL-DHPSGIRYPKASALEA 487          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CAMJE4.587e-2451.461-deoxy-D-xylulose-5-phosphate synthase OS=Campylo... [more]
DXS_CLOTE2.276e-2351.001-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_THEMA3.883e-2348.111-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_THESQ8.650e-2347.171-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_TREDE1.130e-2250.501-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]
DXS_DEIRA1.130e-2250.501-deoxy-D-xylulose-5-phosphate synthase OS=Deinoco... [more]
DXS_THEP11.476e-2248.111-deoxy-D-xylulose-5-phosphate synthase OS=Thermot... [more]
DXS_DEIGD4.293e-2249.501-deoxy-D-xylulose-5-phosphate synthase OS=Deinoco... [more]
DXS_MYXXD9.564e-2249.551-deoxy-D-xylulose-5-phosphate synthase OS=Myxococ... [more]
DXS_RHOBA2.131e-2149.501-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopi... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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