FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TREPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.854e-20
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPR 297
            LA  GVKP  A+YS+FLQR  DQV+HDV +Q LPV FA+DRAG V  DG TH G FD++ +  +PN+ ++ P+   EL+ ++   A+  D P   R+P+
Sbjct:  377 LACAGVKPVVAVYSTFLQRAVDQVIHDVAVQNLPVIFALDRAGAVPHDGETHQGLFDLSILRAVPNINILCPASAHELS-LLFGWALAQDTPVAIRYPK 474          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TREPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema pallidum GN=dxs PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.854e-20
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPR 297
            LA  GVKP  A+YS+FLQR  DQV+HDV +Q LPV FA+DRAG V  DG TH G FD++ +  +PN+ ++ P+   EL+ ++   A+  D P   R+P+
Sbjct:  377 LACAGVKPVVAVYSTFLQRAVDQVIHDVAVQNLPVIFALDRAGAVPHDGETHQGLFDLSILRAVPNINILCPASAHELS-LLFGWALAQDTPVAIRYPK 474          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCTU (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium tuberculosis GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.952e-20
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.952e-20
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCBT (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.952e-20
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCBP (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.952e-20
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCBO (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis GN=dxs PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.952e-20
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G+DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQIMMDVALHKLPVTMVLDRAGITGSDGASHNGMWDLSMLGIVPGIRVAAPRDATRLREELGEALDVDDGPTALRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOSR (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA  G+ P  A+YS+FL R +DQ++ DV L KLPV   +DRAG+ G DG +H G +D++ +  +P M V AP D A L   +  A  +DD P+  RFP+G
Sbjct:  377 LALGGLHPVVAVYSTFLNRAFDQLLMDVALLKLPVTLVLDRAGITGNDGASHNGMWDMSLLGIVPGMKVAAPRDTATLREELDEALAVDDGPTALRFPKG 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium smegmatis GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DRAG+ G DG +H G +D++ +  +P + V AP D A L   +  A  ++D P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTMVLDRAGITGPDGASHNGMWDLSILGIIPGIRVAAPRDGARLRAELGEALAVNDGPTAIRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCGI (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium gilvum (strain PYR-GCK) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.605e-19
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  A+YS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +A A  + D P+  RFP+G+
Sbjct:  375 LAMGGMHPVVALYSTFLNRAFDQMLMDVALHKLPVTMVLDRSGITGPDGASHNGMWDLSILGIVPGMRVAAPRDGARLREELAEAVEVKDGPTAVRFPKGD 475          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_TREPS6.854e-2047.471-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]
DXS_TREPA6.854e-2047.471-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]
DXS_MYCTU8.952e-2043.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCTA8.952e-2043.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBT8.952e-2043.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBP8.952e-2043.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBO8.952e-2043.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_RHOSR1.527e-1945.001-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]
DXS_MYCS22.605e-1943.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCGI2.605e-1943.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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