FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_THEFY (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermobifida fusca (strain YX) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.443e-19
Identity = 42/100 (42.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA  G+ P  A+Y++FL R +DQV+ DV L + PV FA+DRAG+ G DG +H G +D++ +  +PN+ +  P D   L  ++  A  IDD P+  R+P+G
Sbjct:  377 LAMGGLHPVVAVYATFLNRCFDQVLMDVALHRQPVTFALDRAGITGDDGASHNGMWDLSILQVVPNLSIAVPRDAVRLRELLREAISIDDGPTVVRYPKG 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCSS (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain MCS) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.443e-19
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  ++D P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTLVLDRSGVTGPDGASHNGMWDLSVLGIVPGMRVAAPRDGARLREELGEALDVNDAPTAIRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain KMS) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.443e-19
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  ++D P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTLVLDRSGVTGPDGASHNGMWDLSVLGIVPGMRVAAPRDGARLREELGEALDVNDAPTAIRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain JLS) GN=dxs PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.443e-19
Identity = 44/101 (43.56%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  ++D P+  RFP+G+
Sbjct:  375 LAMGGLHPVVAIYSTFLNRAFDQLMMDVALHKLPVTLVLDRSGVTGPDGASHNGMWDLSVLGIVPGMRVAAPRDGARLREELGEALDVNDAPTAIRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MYCVP (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.578e-19
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L KLPV   +DR+G+ G DG +H G +D++ +  +P M V AP D A L   +  A  + D P+  RFP+G+
Sbjct:  375 LAMGGMHPVVAIYSTFLNRAFDQMLMDVALHKLPVTVVLDRSGVTGPDGASHNGMWDLSILGIVPGMRVAAPRDGARLREELGEALDVSDGPTAIRFPKGD 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_LEPBL (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  ++   +      D  P   RFP+ N
Sbjct:  382 MTNGSIIPYMCIYSTFLTRAIDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDMIDSLRWMETYDKAPIAIRFPKAN 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_LEPBJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dxs PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  ++   +      D  P   RFP+ N
Sbjct:  382 MTNGSIIPYMCIYSTFLTRAIDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDMIDSLRWMETYDKAPIAIRFPKAN 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_FUSNN (1-deoxy-D-xylulose-5-phosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.688e-18
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPR 297
            LA  G KP+  IYS+F+QR   Q++HDV +Q LPVRF +DR+G+VG DG TH G +D++F   + N  V+ P+   EL   +  +   +  P   R PR
Sbjct:  353 LAKSGKKPYVCIYSTFIQRAISQLIHDVSIQNLPVRFIIDRSGIVGEDGKTHNGIYDLSFFLSIQNFTVLCPTTAKELGQALEISKNFNLGPLVIRIPR 451          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_COREF (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium efficiens GN=dxs PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.688e-18
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G  P  AIYS+FL R +DQ++ DV L  LPV   +DR+G+ G+DG +H G +D+   S +P + V AP DE  L  ++  A  I+D PS  RFP+G+
Sbjct:  378 LALAGKHPVVAIYSTFLNRAFDQLLMDVALLNLPVTVVLDRSGVTGSDGASHNGVWDLALTSIVPGIRVAAPRDEDTLRELLGEAVDINDGPSVVRFPKGD 478          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS1_KITGR (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitasatospora griseola GN=dxs1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.688e-18
Identity = 41/100 (41.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA+ G+ P  A+Y++FL R +DQV+ DV L +L V F +DRAG+ G DG +H G +D++ +  +P + + AP D A +   V  A  ++D P+  RFP+G
Sbjct:  377 LATGGLHPVVAVYATFLNRAFDQVLMDVALHRLGVTFVLDRAGVTGNDGASHNGMWDLSVLQVVPGLRIAAPRDAARVREHVRQAVAVEDAPTVVRFPKG 476          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_THEFY4.443e-1942.001-deoxy-D-xylulose-5-phosphate synthase OS=Thermob... [more]
DXS_MYCSS4.443e-1943.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSK4.443e-1943.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSJ4.443e-1943.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCVP7.578e-1943.561-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_LEPBL1.293e-1843.561-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_LEPBJ1.293e-1843.561-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_FUSNN1.688e-1842.421-deoxy-D-xylulose-5-phosphate synthase OS=Fusobac... [more]
DXS_COREF1.688e-1844.551-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS1_KITGR1.688e-1841.001-deoxy-D-xylulose-5-phosphate synthase 1 OS=Kitas... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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