FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_STRGG (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=dxs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA+ G+ P  A+Y++FL R +DQV+ DV L K  V F +DRAG+ G DG +H G +D++ + C+P + + AP D  ++   +  A  +DD P+  RF +G
Sbjct:  376 LATGGLHPVFAVYATFLNRAFDQVLMDVALHKCGVTFVLDRAGITGTDGASHNGMWDMSILQCVPTLRIAAPRDADQVRAQLREAVAVDDAPTVVRFSKG 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_NOCFA (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardia farcinica GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.912e-18
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIYS+FL R +DQ++ DV L K PV   +DRAG+ G DG +H G +D++ +  +P + V AP D A L   +  A  + D P+  RFP+G+
Sbjct:  378 LALGGMHPVVAIYSTFLNRAFDQLLMDVALLKQPVTVVLDRAGITGPDGASHNGMWDLSLLGIIPGIRVAAPRDAATLREELGEALAVTDGPTVLRFPKGS 478          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_LEPIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira interrogans GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.912e-18
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +L   +      D  P   RFP+ +
Sbjct:  381 MTNGNIIPYMCIYSTFLTRAMDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDLIDALRWMEKYDKSPVAIRFPKSS 481          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_LEPIC (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dxs PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.912e-18
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            + +  + P+  IYS+FL R  DQ+V DV L  LPVRF +DRAG VG DG TH G FD+ ++  LPNM V  PS+  +L   +      D  P   RFP+ +
Sbjct:  381 MTNGNIIPYMCIYSTFLTRAMDQLVQDVSLMNLPVRFVIDRAGCVGPDGETHQGLFDLGYLLGLPNMDVFVPSNGQDLIDALRWMEKYDKSPVAIRFPKSS 481          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SACEN (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.415e-18
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAV 318
            +A  G+ P  A+YS+FL R +DQ++ DV L + PV   +DR+G+ G DG +H G +D++ +  +P + V AP D   L   +  A  +DD P+  RFP+G+ I  V
Sbjct:  377 MAMGGLHPVFAVYSTFLNRAFDQLLMDVALHRQPVTVTLDRSGITGDDGASHNGMWDLSILGAIPGIQVAAPRDAVTLREELREAVAVDDGPTVMRFPKGSVIEEV 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.415e-18
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA  G+ P  AIYS+FL R +DQ++ DV L K PV   +DRAG+ G DG +H G +D++ +  +P + V AP D   L   +  A ++DD P+  RFP+G
Sbjct:  377 LALGGLHPVVAIYSTFLNRAFDQLLMDVALLKQPVTVVLDRAGVTGVDGASHNGVWDLSLLGIIPGIRVAAPRDADTLREELDEALLVDDGPTVVRFPKG 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_NOCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.415e-18
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  A+Y +FL R +DQV+ DV L K  V F +DR+G+ G DG +H G +D++ +  +P + + AP D A L  ++  A  +DD P+  RFP+G+
Sbjct:  376 LAMGGMHPVVALYGTFLNRAFDQVLMDVALHKCGVTFVLDRSGVTGDDGASHNGMWDMSILQVVPGLRLAAPRDPARLRELLNEAVEVDDAPTVVRFPKGS 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_LEIXX (1-deoxy-D-xylulose-5-phosphate synthase OS=Leifsonia xyli subsp. xyli GN=dxs PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.415e-18
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G+ P  AIY++F+ R +DQV+ DV L K  V F +DRAG+ G DGP+H G +D+  +  +P + + AP D       +A A  + D P+  RFP+G+
Sbjct:  379 LAFGGLHPVVAIYATFMNRAFDQVLMDVALHKAGVTFVLDRAGVTGPDGPSHHGIWDLAILQVVPGIRLAAPRDATRFREELAEAVAVADAPTVLRFPKGS 479          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_FRASN (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain EAN1pec) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.379e-18
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA  G+KP   IY++FL R +DQV+ DV + + PV F +DRAG+ G DG +H G +D++F+  +P + + AP D A L   +  A    D P+  R+P+G
Sbjct:  377 LAMGGLKPVVCIYATFLNRAFDQVLMDVAMHRQPVTFVLDRAGITGEDGASHNGMWDMSFLQVVPGLAIAAPRDAATLRAELDEAVSNTDGPTVVRYPKG 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CORGL (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.379e-18
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G  P  AIYS+FL R +DQ++ DV +   PV   +DR+G+ G+DG +H G +D+   S +P + V AP DE  L  ++  A  IDD P+  RFP+G+
Sbjct:  378 LALGGKHPVVAIYSTFLNRAFDQLLMDVGMLNQPVTLVLDRSGVTGSDGASHNGVWDMALTSIVPGVQVAAPRDEDSLRELLNEAISIDDGPTVVRFPKGD 478          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_STRGG2.205e-1840.001-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_NOCFA4.912e-1842.571-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]
DXS_LEPIN4.912e-1843.561-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_LEPIC4.912e-1843.561-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_SACEN6.415e-1838.681-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS_RHOE46.415e-1843.001-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]
DXS_NOCSJ6.415e-1840.591-deoxy-D-xylulose-5-phosphate synthase OS=Nocardi... [more]
DXS_LEIXX6.415e-1840.591-deoxy-D-xylulose-5-phosphate synthase OS=Leifson... [more]
DXS_FRASN8.379e-1841.001-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]
DXS_CORGL8.379e-1842.571-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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