FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CORGB (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum (strain R) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.379e-18
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA  G  P  AIYS+FL R +DQ++ DV +   PV   +DR+G+ G+DG +H G +D+   S +P + V AP DE  L  ++  A  IDD P+  RFP+G+
Sbjct:  378 LALGGKHPVVAIYSTFLNRAFDQLLMDVGMLNQPVTLVLDRSGVTGSDGASHNGVWDMALTSIVPGVQVAAPRDEDSLRELLNEAISIDDGPTVVRFPKGD 478          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_FRASC (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain CcI3) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.094e-17
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA  G+KP   +Y++FL R +DQV+ DV L + PV F +DRAG+ G DG +H G +D++F+  +P + + AP D   L   +  A    D P+  RFP+G
Sbjct:  377 LAMGGLKPVVCLYATFLNRAFDQVLMDVALHRQPVTFVLDRAGITGEDGASHNGMWDLSFLQVVPGLAIAAPRDAPTLRAELREAVGDTDGPTVVRFPKG 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TROWT (1-deoxy-D-xylulose-5-phosphate synthase OS=Tropheryma whipplei (strain Twist) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA EG+ P  AIYS+F+ R +DQV+ DV L   PV F +DRAG+ G DG +H G +D++ +  +P + + AP D + L + +A     +D P+  RFPRG+
Sbjct:  387 LAYEGLHPVVAIYSTFMNRAFDQVMMDVALHGAPVTFVLDRAGITGPDGASHHGIWDLSLLRIVPGIKLYAPRDASTLRNTLALVC-SEDCPTAIRFPRGS 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TROW8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Tropheryma whipplei (strain TW08/27) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303
            LA EG+ P  AIYS+F+ R +DQV+ DV L   PV F +DRAG+ G DG +H G +D++ +  +P + + AP D + L + +A     +D P+  RFPRG+
Sbjct:  387 LAYEGLHPVVAIYSTFMNRAFDQVMMDVALHGAPVTFVLDRAGITGPDGASHHGIWDLSLLRIVPGIKLYAPRDASTLRNTLALVC-SEDCPTAIRFPRGS 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CORJK (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium jeikeium (strain K411) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN---GIGAV 318
            LA  G+ P  A+YS+FL R +DQ++ DV L KL V   +DRAG+ G+DG +H G +D++    +P + V AP D   L   +  A  +DD P+  RFP+G+   GI AV
Sbjct:  381 LALGGLHPVVAVYSTFLNRAFDQLLMDVALLKLGVTLVLDRAGITGSDGASHNGMWDLSITGIVPGIHVAAPRDARTLELALDRAVAVDDAPTVVRFPKGDAPAGIPAV 489          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS2_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces coelicolor GN=dxs2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.867e-17
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300
            LA  GV P  A+Y++FL R +DQV+ DV L K  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  ++   +  A V+DD P+  RF +G
Sbjct:  376 LAHGGVHPVFAVYATFLNRAFDQVLMDVALHKCGVTFVLDRAGVTGTDGASHNGMWDMSILQVVPGLRLAAPRDADQVRAQLREAVVVDDAPTVVRFSKG 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_PARUW (1-deoxy-D-xylulose-5-phosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   16 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFP 294
            +K   +IY++FLQR +D V HD+ LQ+LPV FA+DRAG+ G DG TH G +DI+F++ +PNM++  P +   L  ++  +A    RP+  R+P
Sbjct:  385 MKIVASIYATFLQRAFDNVFHDICLQELPVVFAIDRAGISGPDGSTHHGIYDISFLNAMPNMIIAQPRNGQVLKELM-ESAFSWKRPTAIRYP 476          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_KOCRD (1-deoxy-D-xylulose-5-phosphate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            +A  G+ P   +Y++FL RG+DQ++ DV L    V   +DRAG+ G DGP+H G +D+  +  +P + + AP DEA +   +  A  + D P+  R+P+G  +GA L
Sbjct:  389 MAFSGLHPVVGLYATFLNRGFDQLLMDVALHHAGVTVVLDRAGVTGPDGPSHHGMWDLALLQIVPGLHLAAPRDEATMVEELREAVAVSDAPTVVRYPKG-AVGAPL 494          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS1_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces avermitilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17
Identity = 38/99 (38.38%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPR 297
            LA+ G+ P  A+Y++FL R +DQ++ DV L +  V F +DRAG+ G DG +H G +D++ +  +P + + AP D  +L   +  A  +DD P+  RFP+
Sbjct:  377 LATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSILQVVPGLRIAAPRDADQLRAQLREAVAVDDAPTLLRFPK 475          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RENSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.158e-17
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315
            +A  G+ P  A+Y++FL RG+DQ++ DV L K  V   +DRAG+ G DGP+H G +D++ +  +P + + AP D   L   +  A  I D P+  R+ +GN +GA
Sbjct:  385 MAFGGLHPVVAMYATFLNRGFDQLLMDVALHKAGVTVVLDRAGVTGPDGPSHHGMWDLSMLQIIPGLHLAAPRDATRLREELREAVAISDAPTVLRYSKGN-VGA 488          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_CORGB8.379e-1842.571-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS_FRASC1.094e-1741.001-deoxy-D-xylulose-5-phosphate synthase OS=Frankia... [more]
DXS_TROWT1.429e-1742.571-deoxy-D-xylulose-5-phosphate synthase OS=Tropher... [more]
DXS_TROW81.429e-1742.571-deoxy-D-xylulose-5-phosphate synthase OS=Tropher... [more]
DXS_CORJK1.429e-1742.201-deoxy-D-xylulose-5-phosphate synthase OS=Coryneb... [more]
DXS2_STRCO1.867e-1741.001-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_PARUW3.184e-1744.091-deoxy-D-xylulose-5-phosphate synthase OS=Protoch... [more]
DXS_KOCRD3.184e-1737.381-deoxy-D-xylulose-5-phosphate synthase OS=Kocuria... [more]
DXS1_STRAW3.184e-1738.381-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS_RENSM4.158e-1739.051-deoxy-D-xylulose-5-phosphate synthase OS=Renibac... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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