FC930356
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CORGB (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium glutamicum (strain R) GN=dxs PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.379e-18 Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 LA G P AIYS+FL R +DQ++ DV + PV +DR+G+ G+DG +H G +D+ S +P + V AP DE L ++ A IDD P+ RFP+G+ Sbjct: 378 LALGGKHPVVAIYSTFLNRAFDQLLMDVGMLNQPVTLVLDRSGVTGSDGASHNGVWDMALTSIVPGVQVAAPRDEDSLRELLNEAISIDDGPTVVRFPKGD 478
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_FRASC (1-deoxy-D-xylulose-5-phosphate synthase OS=Frankia sp. (strain CcI3) GN=dxs PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.094e-17 Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300 LA G+KP +Y++FL R +DQV+ DV L + PV F +DRAG+ G DG +H G +D++F+ +P + + AP D L + A D P+ RFP+G Sbjct: 377 LAMGGLKPVVCLYATFLNRAFDQVLMDVALHRQPVTFVLDRAGITGEDGASHNGMWDLSFLQVVPGLAIAAPRDAPTLRAELREAVGDTDGPTVVRFPKG 476
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TROWT (1-deoxy-D-xylulose-5-phosphate synthase OS=Tropheryma whipplei (strain Twist) GN=dxs PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17 Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 LA EG+ P AIYS+F+ R +DQV+ DV L PV F +DRAG+ G DG +H G +D++ + +P + + AP D + L + +A +D P+ RFPRG+ Sbjct: 387 LAYEGLHPVVAIYSTFMNRAFDQVMMDVALHGAPVTFVLDRAGITGPDGASHHGIWDLSLLRIVPGIKLYAPRDASTLRNTLALVC-SEDCPTAIRFPRGS 486
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_TROW8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Tropheryma whipplei (strain TW08/27) GN=dxs PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17 Identity = 43/101 (42.57%), Postives = 64/101 (63.37%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN 303 LA EG+ P AIYS+F+ R +DQV+ DV L PV F +DRAG+ G DG +H G +D++ + +P + + AP D + L + +A +D P+ RFPRG+ Sbjct: 387 LAYEGLHPVVAIYSTFMNRAFDQVMMDVALHGAPVTFVLDRAGITGPDGASHHGIWDLSLLRIVPGIKLYAPRDASTLRNTLALVC-SEDCPTAIRFPRGS 486
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CORJK (1-deoxy-D-xylulose-5-phosphate synthase OS=Corynebacterium jeikeium (strain K411) GN=dxs PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.429e-17 Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGN---GIGAV 318 LA G+ P A+YS+FL R +DQ++ DV L KL V +DRAG+ G+DG +H G +D++ +P + V AP D L + A +DD P+ RFP+G+ GI AV Sbjct: 381 LALGGLHPVVAVYSTFLNRAFDQLLMDVALLKLGVTLVLDRAGITGSDGASHNGMWDLSITGIVPGIHVAAPRDARTLELALDRAVAVDDAPTVVRFPKGDAPAGIPAV 489
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS2_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces coelicolor GN=dxs2 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.867e-17 Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRG 300 LA GV P A+Y++FL R +DQV+ DV L K V F +DRAG+ G DG +H G +D++ + +P + + AP D ++ + A V+DD P+ RF +G Sbjct: 376 LAHGGVHPVFAVYATFLNRAFDQVLMDVALHKCGVTFVLDRAGVTGTDGASHNGMWDMSILQVVPGLRLAAPRDADQVRAQLREAVVVDDAPTVVRFSKG 475
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_PARUW (1-deoxy-D-xylulose-5-phosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=dxs PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17 Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 1 Query: 16 VKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFP 294 +K +IY++FLQR +D V HD+ LQ+LPV FA+DRAG+ G DG TH G +DI+F++ +PNM++ P + L ++ +A RP+ R+P Sbjct: 385 MKIVASIYATFLQRAFDNVFHDICLQELPVVFAIDRAGISGPDGSTHHGIYDISFLNAMPNMIIAQPRNGQVLKELM-ESAFSWKRPTAIRYP 476
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_KOCRD (1-deoxy-D-xylulose-5-phosphate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=dxs PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17 Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321 +A G+ P +Y++FL RG+DQ++ DV L V +DRAG+ G DGP+H G +D+ + +P + + AP DEA + + A + D P+ R+P+G +GA L Sbjct: 389 MAFSGLHPVVGLYATFLNRGFDQLLMDVALHHAGVTVVLDRAGVTGPDGPSHHGMWDLALLQIVPGLHLAAPRDEATMVEELREAVAVSDAPTVVRYPKG-AVGAPL 494
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS1_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces avermitilis GN=dxs1 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17 Identity = 38/99 (38.38%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPR 297 LA+ G+ P A+Y++FL R +DQ++ DV L + V F +DRAG+ G DG +H G +D++ + +P + + AP D +L + A +DD P+ RFP+ Sbjct: 377 LATGGLHPVVAVYATFLNRAFDQLLMDVALHRCGVTFVLDRAGVTGVDGASHNGMWDMSILQVVPGLRIAAPRDADQLRAQLREAVAVDDAPTLLRFPK 475
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RENSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=dxs PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.158e-17 Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1 Query: 1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGA 315 +A G+ P A+Y++FL RG+DQ++ DV L K V +DRAG+ G DGP+H G +D++ + +P + + AP D L + A I D P+ R+ +GN +GA Sbjct: 385 MAFGGLHPVVAMYATFLNRGFDQLLMDVALHKAGVTVVLDRAGVTGPDGPSHHGMWDLSMLQIIPGLHLAAPRDATRLREELREAVAISDAPTVLRYSKGN-VGA 488 The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bpback to top |