FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.520e-38
Identity = 74/107 (69.16%), Postives = 87/107 (81.31%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA++G++PF AIYS+FLQR YDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FDIT+++ LPNMVVMA +DEAEL HM  TAA  D  P  FR+PRGNG G  L
Sbjct:  381 LAAQGMRPFAAIYSTFLQRAYDQVVHDVAIQNLPVRFAIDRAGLVGADGSTHAGSFDITYLATLPNMVVMAAADEAELVHMTYTAAEHDAGPIAFRYPRGNGTGVAL 487          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.243e-37
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA EG KPF AIYS+FLQR YDQ++HDV +QKLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE EL HMV TAA  D  P  FR+PRG GIG
Sbjct:  381 LACEGYKPFVAIYSTFLQRAYDQIIHDVSIQKLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPEFVVMAPSDELELMHMVRTAAAYDQGPISFRYPRGEGIG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.243e-37
Identity = 72/104 (69.23%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCA+YS+FLQRGYDQVVHDV +Q LPVRF +DRAG VGADGPTH G+FD  F++ LP  VVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G
Sbjct:  381 LAAEGYKPFCALYSTFLQRGYDQVVHDVAIQGLPVRFPIDRAGFVGADGPTHAGSFDTGFLASLPGFVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.624e-37
Identity = 72/104 (69.23%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A EG KPF AIYS+FLQR YDQV+HDV +QKLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE EL HMV TAA  D  P  FR+PRG G+G
Sbjct:  381 MACEGYKPFVAIYSTFLQRAYDQVIHDVSIQKLPVRFAIDRAGFVGADGATHAGSFDIVFLATLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGVG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BARHE (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella henselae GN=dxs PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.624e-37
Identity = 72/104 (69.23%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A EG KPF AIYS+FLQR YDQ++HDV +QKLPVRFA+DRAG VGADG TH G+FDI F++ LP  VVMAPSDE EL HMV TAA  D  P  FR+PRG GIG
Sbjct:  381 MACEGYKPFVAIYSTFLQRAYDQIIHDVSIQKLPVRFAIDRAGFVGADGATHAGSFDIVFLTTLPEFVVMAPSDEVELMHMVRTAAAYDQGPISFRYPRGEGIG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_PELUB (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelagibacter ubique GN=dxs PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.618e-37
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA+EG KP+ AIYS+FLQR YDQVVHDV +Q LPVRF +DRAGLVGADG TH G+FDIT++S LPN +VMAPSDEAEL  M  T+  I+++P   R+PRGNGIG  L
Sbjct:  379 LATEGYKPYVAIYSTFLQRAYDQVVHDVAIQSLPVRFIIDRAGLVGADGSTHAGSFDITYLSTLPNFIVMAPSDEAELVKMTNTSMTINNKPCAIRYPRGNGIGVEL 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.059e-37
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA EG+KPF A+YSSFLQRGYDQVVHDV LQKLPVRFA+DRAG VGADG TH G FD+ F+ CLPN+VVM  +DEAEL  MV TAA  D  P   R+PRG G+G
Sbjct:  383 LACEGLKPFVALYSSFLQRGYDQVVHDVVLQKLPVRFAIDRAGFVGADGATHGGVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVG 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.059e-37
Identity = 73/104 (70.19%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA EG+KPF A+YSSFLQRGYDQVVHDV LQKLPVRFA+DRAG VGADG TH G FD+ F+ CLPN+VVM  +DEAEL  MV TAA  D  P   R+PRG G+G
Sbjct:  383 LACEGLKPFVALYSSFLQRGYDQVVHDVVLQKLPVRFAIDRAGFVGADGATHGGVFDMAFLGCLPNLVVMCAADEAELARMVVTAAGHDSGPIALRYPRGEGVG 486          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ERYLH (1-deoxy-D-xylulose-5-phosphate synthase OS=Erythrobacter litoralis (strain HTCC2594) GN=dxs PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.053e-36
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA++G++PF AIYS+FLQR YDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FD+T+++ LPN VVMA +DEAEL HM  TAA  D  P  FR+PRG GIG
Sbjct:  381 LAAQGMRPFAAIYSTFLQRAYDQVVHDVAIQNLPVRFAIDRAGLVGADGSTHAGSFDVTYLATLPNFVVMAAADEAELVHMTYTAAEHDSGPIAFRYPRGGGIG 484          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHIME (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium meliloti GN=dxs PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.375e-36
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA+EG KPF A+YS+FLQR YDQVVHDV +Q LPVRF +DRAG VGADGPTH G+FD T+++ LP  VVMA +DEAEL HMV TAA  D+ P  FR+PRG G+G  L
Sbjct:  386 LAAEGYKPFAALYSTFLQRAYDQVVHDVAIQGLPVRFPIDRAGFVGADGPTHAGSFDTTYLATLPGFVVMAAADEAELKHMVRTAAAYDEGPISFRYPRGEGVGVEL 492          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_SPHAL9.520e-3869.161-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_BART11.243e-3770.191-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_AGRVS1.243e-3769.231-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_BARQU1.624e-3769.231-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_BARHE1.624e-3769.231-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_PELUB3.618e-3767.291-deoxy-D-xylulose-5-phosphate synthase OS=Pelagib... [more]
DXS2_RHORT8.059e-3770.191-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_RHORT8.059e-3770.191-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_ERYLH1.053e-3668.271-deoxy-D-xylulose-5-phosphate synthase OS=Erythro... [more]
DXS_RHIME1.375e-3666.361-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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